Job Description P0A908 Confidence 24.84% Date Thu Jan 5 11:09:06 GMT 2012 Rank 38 Aligned Residues 157 % Identity 13% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.
Query Sequence		W	N	D	A	T	D	K	L	S	I	T	A	Y	W	S	P	L	Y	F	K	A	K	D	S	G	D	H	Q	M	R	H	L	D	D	R	K	S	T	M	M	A	G	L	S	Y	A	H	F	T	Q	Y	G	Y	L	R	T	T	L	A	G	.	.	.	.	.	D	T	L	D	N	S	N	G	I	V	W	D	M	A	W
Query Conservation																																																														.	.	.	.	.
Alig confidence																																																														.	.	.	.	.
Template Conservation
Template Sequence		G	L	T	A	G	V	N	W	R	I	S	G	Y	R	N	D	V	S	D	L	I	D	Y	D	D	H	T	L	K	Y	Y	N	E	G	K	A	R	I	K	G	V	E	A	T	A	N	F	D	T	G	P	L	T	H	T	V	S	Y	D	Y	V	D	A	R	N	A	I	T	D	T	P	L	L	R	R	A	K	Q	Q	V
Template Known Secondary structure					T	T																				T	T	T	T																						T	T															T	T	T			B		T	T			S
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	R	Y	T	N	G	G	L	T	V	T	P	G	I	G	V	Q	W	N	S	E	N	Q	N	E	Y	Y	Y	G	V	S	R	K	E	S	A	R	S	G	L	R	G	Y	N	P	N	D	S	W	S	P	Y	L	E	L	S	A	S	Y	N	F	L	G	D	W	S	V	Y	G	T	A	R	Y	T	R	L	S	D	E
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template Sequence		K	Y	Q	L	D	W	Q	L	Y	D	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P	Y	Q	T	V	K	M	G	G	V	.	.	.	.	.	.	.	.	.	.	S	L	W	D	L	A	V	A	Y	P	V	T	S	H	L	T	V	R	G	K	I	A	N	.	.	.	.	.	.
Template Known Secondary structure										T	T																			S	S	S	S										.	.	.	.	.	.	.	.	.	.											S	S	S	S									S	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.											.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		V	T	D	S	P	M	V	D	K	S	W	T	G	.	L	I	S	T	G	I	T	Y	K	F
Query Conservation															.
Alig confidence		.	.	.	.	.									.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	L	F	D	K	D	Y	A	G	R	E	Y	T	L	S	G	S	Y	T	F
Template Known Secondary structure		.	.	.	.	.	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions