Job Description P0A908 Confidence 85.93% Date Thu Jan 5 11:09:06 GMT 2012 Rank 25 Aligned Residues 130 % Identity 15% Template d1t16a_ SCOP info Transmembrane beta-barrels Porins Outer membrane protein transport protein Resolution 2.60

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130																				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	K	S	T	M	M	A	G	L	S	Y	A	H	F	T	Q	Y	G	Y	L	R	T	T	L	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	T	L	D	N	S	N	G	I	V	W	D	M	A	W	L	Y	R	Y	T	N	G	G	L	T	V	T	P	G	I	G	V	Q	W
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation																.																																																								.
Template Sequence		N	L	P	E	M	W	E	V	S	G	Y	N	R	V	.	D	P	Q	W	A	I	H	Y	S	L	A	Y	T	S	W	S	Q	F	Q	Q	L	K	A	T	S	T	S	G	D	T	L	F	Q	K	H	E	G	F	K	D	A	Y	R	I	A	L	G	T	T	Y	Y	Y	D	D	N	.	W	T	F	R	T	G	I	A	F
Template Known Secondary structure																.		T	T												G	G	G									T	T	S																									S	S	S	.
Template Predicted Secondary structure																.																																																								.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.		.	340	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																							.	.	.
Query SS confidence																																																																							.	.	.
Query Sequence		N	S	E	N	Q	N	E	Y	Y	Y	G	V	S	R	K	E	S	A	R	S	G	L	R	G	Y	N	P	N	D	S	W	S	P	Y	L	E	L	S	A	S	Y	N	F	L	G	D	W	S	V	Y	G	T	A	R	Y	T	R	L	S	D	E	V	T	D	S	P	M	V	D	.	.	.	K	S	W	T	G	L	I	S
Query Conservation																																																																							.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.												.																																							.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		D	D	S	P	V	P	A	.	.	.	.	.	.	.	.	.	.	.	.	Q	N	R	S	I	S	I	P	D	Q	D	.	R	F	W	L	S	A	G	T	T	Y	A	F	N	K	D	A	S	V	D	V	G	V	S	Y	M	H	G	Q	S	V	K	I	N	E	G	P	Y	Q	F	E	S	E	G	K	A	W	L	F	G
Template Known Secondary structure					S	S		T	.	.	.	.	.	.	.	.	.	.	.	.	T	T			S	S	S					.												S	S	S	S																				T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		348	.	350	.	.	.	.													.	.	.	.	.	360	.	.	.	.	.		.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		242	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	I	T	Y	K	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	F	N	Y	A	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions