Job Description P0A908 Confidence 86.74% Date Thu Jan 5 11:09:06 GMT 2012 Rank 22 Aligned Residues 171 % Identity 16% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.																																															.
Query SS confidence																	.	.	.																																															.
Query Sequence		F	R	G	L	G	G	G	Y	Y	L	W	N	D	A	T	.	.	.	D	K	L	S	I	T	A	Y	W	S	P	L	Y	F	K	A	K	D	S	G	D	H	Q	M	R	H	L	D	D	R	K	S	T	M	M	A	G	L	S	Y	A	H	F	T	Q	Y	.	G	Y	L	R	T	T	L	A	G	D	T	L	D	N	S
Query Conservation																	.	.	.																																															.
Alig confidence																	.	.	.																						.	.	.	.	.	.	.																			.
Template Conservation																																									.	.	.	.	.	.	.
Template Sequence		V	S	G	L	E	I	G	L	D	R	G	W	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	T	Y	P	G	D	G	G	.	.	.	.	.	.	.	G	K	V	K	G	L	H	V	G	G	Y	A	A	Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q
Template Known Secondary structure																T	T																		B	T	T	T	B		.	.	.	.	.	.	.																	S	S	S	B
Template Predicted Secondary structure																																									.	.	.	.	.	.	.
Template SS confidence
		772	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810								.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.
																			137	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																																													.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																																													.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	G	I	V	W	D	M	A	W	L	Y	R	Y	T	N	.	G	G	L	T	V	T	P	G	I	G	V	Q	W	N	S	E	N	Q	N	E	Y	Y	Y	G	V	S	R	K	E	S	A	R	S	G	L	R	G	Y	N	P	N	D	S	W	.	S	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																																													.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.																						.	.	.	.	.	.																		.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence		Y	N	I	A	G	T	D	G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	.	.	.	.	.	.	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L
Template Known Secondary structure							S	S	S																				B					G	G	G																				.	.	.	.	.	.			S	S	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
		845	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.							.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	E	L	S	A	S	Y	N	F	L	G	D	W	S	V	Y	G	T	A	R	Y	T	R	L	S	D	E	V	T	D	S	P	M	V	D	K	S	W	T	G	L	I	S	T	G	I	T	Y	K	F
Query Conservation
Alig confidence																																			.	.	.	.
Template Conservation																																			.	.	.	.
Template Sequence		G	L	R	F	G	R	R	I	A	L	A	G	G	N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	R	.	.	.	.	H	G	R	V	E	L	G	A	G	V	D	A	A	L
Template Known Secondary structure												T	T	S																					.	.	.	.	B
Template Predicted Secondary structure																																			.	.	.	.
Template SS confidence
		919	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.					.	.	.	.	.	.	.	.	960	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions