Job Description P0A908 Confidence 31.42% Date Thu Jan 5 11:09:06 GMT 2012 Rank 34 Aligned Residues 152 % Identity 16% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	N	D	A	T	D	K	L	S	I	T	A	Y	W	S	P	L	Y	F	K	A	K	D	S	G	D	H	Q	M	R	H	L	D	D	R	K	S	T	M	M	A	G	L	S	Y	A	H	F	T	Q	Y	G	Y	L	R	T	T	L	A	G	.	.	.	.	.	.	.	.	.	.	.	D	T	L	D	N	S	N	G	I
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		Y	E	F	D	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	.	.	.	.	.	.	.	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K
Template Known Secondary structure					T	T														S	T	T	S	S	S	S	S	.	.	.	.	.	.	.			S														T	T											S	S							T	T	T							S
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	D	M	A	W	L	Y	R	Y	T	N	G	G	L	T	V	T	P	G	I	G	V	Q	W	N	S	E	N	Q	N	E	Y	Y	Y	G	V	S	R	K	E	S	A	R	S	G	L	R	G	Y	N	P	N	D	S	W	S	P	Y	L	E	L	S	A	S	Y	N	F	L	G	D	W	S	V	Y	G	T	A	R	Y
Query Conservation
Alig confidence																.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	.	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	G	G	S	A	D	L	A	K	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N	X	N	V	W	V	D	Y	R	F
Template Known Secondary structure														T	T	.	S														S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S																		S	S
Template Predicted Secondary structure																.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	L	S	D	E	V	T	D	S	P	M	V	D	K	S	W	T	G	L	I	S	T	G	I	T	Y	K	F
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		N	L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D	D	Q	A	A	V	.	.	G	I	T	Y	Q	F
Template Known Secondary structure								S	S		T	T	T	T		S	S						.	.
Template Predicted Secondary structure																							.	.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.			.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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