Job Description P0A908 Confidence 98.71% Date Thu Jan 5 11:09:06 GMT 2012 Rank 3 Aligned Residues 166 % Identity 16% Template c2k0lA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Resolution UNK

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	A	T	D	K	L	S	I	T	A	Y	W	S	P	L	Y	F	K	A	K	D	S	G	D	H	Q	M	R	H	L	D	D	R	K	S	T	M	M	A	G	L	S	Y	A	H	F	.	T	Q	Y	G	Y	L	R	T	T	L	A	G	.	.	.	.	.	.	.	.	.	.	.	D	T	L	D	N	S	N	G	I
Query Conservation																																																	.													.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	N	T	W	Y	A	G	G	K	L	G	W	S	Q	Y	H	D	T	G	F	Y	G	N	G	F	Q	N	N	N	G	P	T	R	N	D	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	L	G	F	E	M	G	Y	D	W	L	G	R	M	A	Y	K	G	S	V	D	N	G	A	F	K	A	Q	G	V
Template Known Secondary structure															S					S						S				S				S																	T	T																		S	S				S	S
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	W	D	M	A	W	L	Y	R	Y	T	N	G	G	L	T	V	T	P	G	I	G	V	Q	W	N	S	E	N	Q	N	E	Y	Y	Y	G	V	S	R	K	E	S	A	R	S	G	L	R	G	Y	N	P	N	D	S	W	S	P	Y	L	E	L	S	A	S	Y	N	F	L	G	D	W	S	V	Y	G	T	A	R	Y
Query Conservation
Alig confidence													.																							.	.	.	.	.	.	.	.
Template Conservation													.																							.	.	.	.	.	.	.	.
Template Sequence		Q	L	T	A	K	L	G	Y	P	I	T	.	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	S	K	G	N	Y	.	.	.	.	.	.	.	.	A	S	T	G	V	S	R	S	E	H	D	T	G	V	S	P	V	F	A	G	G	V	E	W	A	V	T	R	D	I	A	T	R	L	E	Y	Q	W
Template Known Secondary structure											S	S	.	S	S																			S		.	.	.	.	.	.	.	.			S	S	S																						S	S	S								S	S
Template Predicted Secondary structure													.																							.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.									.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	L	S	D	E	V	T	D	S	P	M	V	D	K	S	W	T	G	L	I	S	T	G	I	T	Y	K	F
Query Conservation
Alig confidence																				.	.
Template Conservation																				.	.
Template Sequence		V	N	N	I	G	D	A	G	T	V	G	T	R	P	D	N	G	M	.	.	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure			S	S					S					S	S		S			.	.
Template Predicted Secondary structure																				.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.	190	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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