Job Description P0A908 Confidence 97.77% Date Thu Jan 5 11:09:06 GMT 2012 Rank 9 Aligned Residues 144 % Identity 19% Template c2jmmA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein Resolution UNK

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		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.		120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																																				.												.	.
Query SS confidence																																																				.												.	.
Query Sequence		L	W	N	D	A	T	D	K	L	S	I	T	A	Y	W	S	P	L	Y	F	K	A	K	D	S	G	D	H	Q	M	R	H	L	D	D	R	K	S	T	M	M	A	G	L	S	Y	A	H	F	T	.	Q	Y	G	Y	L	R	T	T	L	A	G	.	.	D	T	L	D	N	S	N	G	I	V	W	D	M	A	W	L
Query Conservation																																																				.												.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.												.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	P	K	D	N	T	W	Y	T	G	A	K	L	G	W	S	Q	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	E	N	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	V	G	F	E	M	G	Y	D	W	L	G	R	M	P	R	K	A	Q	G	V	Q	L	T	A	K	L	G
Template Known Secondary structure					S	S												T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S													S	S	S												S	S	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.																	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		147	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.			.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure								.																																																												.	.
Query SS confidence								.																																																												.	.
Query Sequence		Y	R	Y	T	N	G	.	G	L	T	V	T	P	G	I	G	V	Q	W	N	S	E	N	Q	N	E	Y	Y	Y	G	V	S	R	K	E	S	A	R	S	G	L	R	G	Y	N	P	N	D	S	W	S	P	Y	L	E	L	S	A	S	Y	N	F	L	G	D	W	.	.	S	V	Y	G	T	A	R	Y	T	R	L	S
Query Conservation								.																																																												.	.
Alig confidence								.																														.	.	.	.	.	.	.	.	.	.																					.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	P	K	L	G	T	D	D	L	D	I	Y	T	R	L	G	G	M	V	W	R	A	D	T	S	D	K	D	G	N	G	Y	I	S	A	A	.	.	.	.	.	.	.	.	.	.	E	A	S	V	S	P	V	F	A	G	G	V	E	Y	V	I	R	R	R	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	N
Template Known Secondary structure				T	T		T	T	T													S	S	B						S	S	S						.	.	.	.	.	.	.	.	.	.	B																S	S	S		S	S	S											S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100											.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	V	T	D	S	P	M	V	D	K	S	W	T	G	L	I	S	T	G	I	T	Y	K	F
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.
Template Sequence		N	A	S	.	.	.	.	.	.	.	.	.	D	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure		S	S	S	.	.	.	.	.	.	.	.	.													S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Template SS confidence
		135	.	.										.	.	140	.	.	.	.	.	.	.	.	.	150

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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