Job Description P0A908 Confidence 97.38% Date Thu Jan 5 11:09:06 GMT 2012 Rank 12 Aligned Residues 180 % Identity 23% Template c2iwvD_ PDB info PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation Resolution 2.3 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure															.	.	.	.											.	.	.	.	.											.
Query SS confidence															.	.	.	.											.	.	.	.	.											.
Query Sequence		E	G	K	F	S	L	G	A	G	V	G	V	V	.	.	.	.	E	H	P	Y	K	D	Y	D	T	D	.	.	.	.	.	V	Y	P	V	P	V	I	N	Y	E	.	G	D	N	F	W	F	R	G	L	G	G	G	Y	Y	L	W	N	D	A	T	D	K	L	S	I	T	A	Y	W	S	P	L	Y	F	K	A	K
Query Conservation															.	.	.	.											.	.	.	.	.											.
Alig confidence															.	.	.	.											.	.	.	.	.											.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	D	D	F	S	F	G	L	T	G	G	F	R	N	Y	G	Y	H	Y	V	D	E	P	G	K	D	T	A	N	M	Q	R	W	K	I	A	P	D	W	D	V	K	L	T	D	D	L	R	F	N	G	W	L	S	M	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S	S																	S	S		T	T																				S	S	S												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.								.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.																											.
Query SS confidence																																																.	.	.	.	.	.	.																											.
Query Sequence		D	S	G	D	H	Q	M	R	H	L	D	D	R	K	S	T	M	M	A	G	L	S	Y	A	H	F	T	Q	Y	G	Y	L	R	T	T	L	A	G	D	T	L	D	N	S	N	G	.	.	.	.	.	.	.	I	V	W	D	M	A	W	L	Y	R	Y	T	N	G	G	L	T	V	T	P	G	I	G	V	Q	W	.
Query Conservation																																																.	.	.	.	.	.	.																											.
Alig confidence																										.																						.	.	.	.	.	.	.																											.
Template Conservation																										.
Template Sequence		F	A	N	D	L	N	T	T	G	Y	A	D	T	R	V	E	T	E	T	G	L	Q	Y	T	.	F	N	E	T	V	A	L	R	V	N	Y	Y	L	E	R	G	F	N	M	D	D	S	R	N	N	G	E	F	S	T	Q	E	I	R	A	Y	L	P	L	T	L	G	N	H	S	V	T	P	Y	T	R	I	G	L	D
Template Known Secondary structure				S									S													.		S	S	S	B														S	S	T	T			T	T																T	T
Template Predicted Secondary structure																										.
Template SS confidence
		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160		.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
					165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	N	S	E	N	Q	N	E	Y	Y	Y	G	V	S	R	K	E	S	A	R	S	G	L	R	G	Y	N	P	N	D	S	W	S	P	Y	L	E	L	S	A	S	Y	N	F	L	G	D	W	S	V	Y	G	T	A	R	Y	T	R	L	S	D	E	V	T	D	S	P	M	V	D	K	S	W	T	G	L	I	S
Query Conservation		.	.	.
Alig confidence		.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Sequence		R	W	S	N	W	D	W	Q	D	D	I	E	R	E	G	H	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	R	V	G	L	F	Y	G	Y	D	F	Q	N	G	L	S	V	S	L	E	Y	A	F	E	.	.	.	.	.	W	Q	D	H	D	E	G	D	S	D	K	F	H	Y	A	G
Template Known Secondary structure						T	T	T	T	T			S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	S	S											.	.	.	.	.					S	S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		242	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	I	T	Y	K	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	V	N	Y	S	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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