 |
Job Description | P31545 | Confidence | 5.77% | Date | Thu Jan 5 11:48:05 GMT 2012 |
Rank | 57 | Aligned Residues | 70 |
% Identity | 16% | Template | c1ko9A_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:8-oxoguanine dna glycosylase; |
PDBTitle: native structure of the human 8-oxoguanine dna glycosylase2 hogg1
|
Resolution | 2.15 Å |
|
 |
  |   |
341 | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | S | S | L | M | L | R | R | G | Y | S | Y | S | L | G | V | T | N | S | G | Q | L | D | M | G | L | L | F | V | C | Y | Q | H | D | L | E | K | G | F | L | T | V | Q | K | R | L | N | G | E | A | L | E | E | Y | V | K | P | I | G | G | G | Y | F | F | A | L | P | G | V | K | D | A | N | D | Y | F | G | S | A | L |
Query Conservation |   |
  |   |   |   |
|
|
|
|   |   |
|
|   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |
|
|
|
|
|   |
|   |   |   |   |
|   |   |
|
|   |
|
|   |   |
|   |
|   |   |
|   |   |   |   |   |
|
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|
|
| . |
|
| . | . | . | . | . | . | . | . | . | . |
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |   |   |
| . |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|
|
|   |
|
|   |   |   |   |
|   |   |
Template Sequence |   |
Q | G | V | R | L | L | R | Q | D | . |
P | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | C | L | F | S | F | I | C | S | S | N | N | N | I | A | R | I | T | G | M | V | E | R | L | . |
C | Q | A | F | G | P | R | L | I | Q | L | D | D | V | T | Y | H | G | F | P | S | L | Q | A | L | A | G | P | E | V | E | A | H |
Template Known Secondary structure |   |
| S |
|
|
|
|
|
|
| . |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  | S | S |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  | S |
|  |  |  |  |  | T | T |  |  |  |  |
|
|
|
|  |  |  |  |  | S | T | T |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
| . |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
128 | . | 130 | . | . | . | . | . | . | |
. | . | |
|
|
|
|
|
|
|
|
|
. | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | |
. | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . |
  |
  |   |
421 | . |
Predicted Secondary structure |   |
 |
|
Query SS confidence |   |
|
|
Query Sequence |   |
L | R |
Query Conservation |   |
|   |
Alig confidence |   |
|
|
Template Conservation |   |
|
|
Template Sequence |   |
L | R |
Template Known Secondary structure |   |
 |  |
Template Predicted Secondary structure |   |
 |  |
Template SS confidence |   |
|
|
  |   |
196 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|