Job Description P77182 Confidence 100.00% Date Thu Jan 5 12:26:05 GMT 2012 Rank 11 Aligned Residues 361 % Identity 16% Template c3nyeA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-arginine dehydrogenase; PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine Resolution 1.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	K	R	E	A	A	I	I	G	G	G	I	A	S	A	L	L	S	L	A	L	L	R	R	G	W	Q	V	T	L	Y	C	A	D	E	A	P	A	L	G	A	S	G	N	R	Q	G	A	L	Y	P	L	L	S	K	H	D	E	A	L	N	R	F	F	S	N	A	F	T	F	A	R	R	F	Y	D	Q	L	P
Query Conservation
Alig confidence																																						.																					.	.
Template Conservation																																						.																					.	.
Template Sequence		P	I	E	A	D	Y	L	V	I	G	A	G	I	A	G	A	S	T	G	Y	W	L	S	A	H	G	R	V	V	V	L	E	R	E	A	Q	.	P	G	Y	H	S	T	G	R	S	A	A	H	Y	T	V	A	Y	G	T	P	.	.	Q	V	R	A	L	T	A	A	S	R	A	F	F	D	N	P	P	A	G	F	C
Template Known Secondary structure													S											T	T	T	S							S	S	S	S	.	T	T	S	S	G	G	G	S	S						S	S		S	S		.	.															S			T	T	S
Template Predicted Secondary structure																																						.																					.	.
Template SS confidence
		1001	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.		.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.			.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.				.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		V	K	F	D	H	D	W	C	G	V	T	Q	L	G	W	D	.	.	.	E	K	S	Q	H	K	I	A	Q	M	L	S	M	D	L	P	A	E	L	A	V	A	V	E	A	N	A	V	E	Q	I	T	G	V	A	T	N	C	S	G	I	T	Y	P	Q	G	G	W	L	C	P	A	E	L	T	R	N	V	L	E	L
Query Conservation																		.	.	.
Alig confidence																		.	.	.
Template Conservation
Template Sequence		E	H	P	L	L	S	P	R	P	E	M	V	V	D	F	S	D	D	P	E	E	L	R	R	Q	Y	E	S	G	K	A	L	V	P	Q	M	R	L	L	D	A	E	Q	A	C	S	I	V	P	V	L	R	R	D	K	V	F	G	A	T	Y	D	P	T	G	A	D	I	D	T	D	A	L	H	Q	G	Y	L	R	G
Template Known Secondary structure		S	S		S											S	S																		T	T													S	T	T	B		G	G	G								T	T
Template Predicted Secondary structure
Template SS confidence
		1078	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.				.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.
Query SS confidence																																																											.	.	.
Query Sequence		A	Q	Q	Q	G	L	Q	I	Y	Y	Q	Y	Q	L	Q	N	L	S	R	K	D	D	C	W	L	L	N	F	A	G	D	Q	Q	A	T	H	S	V	V	V	L	A	N	G	H	Q	I	S	R	F	S	Q	T	S	T	L	P	.	.	.	V	Y	S	V	A	G	Q	V	S	H	I	P	T	T	P	E	L	A	E	L
Query Conservation																																																											.	.	.
Alig confidence																												.																															.	.	.
Template Conservation																												.
Template Sequence		I	R	R	N	Q	G	Q	V	L	C	N	H	E	A	L	E	I	R	R	V	D	G	A	W	E	V	.	R	C	D	A	G	S	Y	R	A	A	V	L	V	N	A	A	G	A	W	C	D	A	I	A	G	L	A	G	V	R	P	L	G	L	Q	P	K	R	R	S	A	F	I	F	A	P	P	P	G	I	D	C	H
Template Known Secondary structure					T	T					S	S										T	T					.			S	S													G	G	G									T																				T	T				T
Template Predicted Secondary structure																												.
Template SS confidence
		1158	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.		.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.
		496			.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		K	.	.	Q	V	L	C	Y	D	G	Y	L	T	P	Q	N	P	A	N	Q	H	H	C	I	G	A	S	Y	H	R	G	S	E	D	T	A	Y	S	E	D	D	Q	Q	Q	N	R	Q	R	L	I	D	C	F	P	Q	A	Q	W	A	K	E	V	D	V	S	D	K	E	A	R	C	G	V	R	C	A	T	R	D	H
Query Conservation			.	.
Alig confidence			.	.																																																							.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		D	W	P	M	L	V	S	L	D	E	S	F	Y	L	K	P	D	A	G	M	L	L	G	S	P	A	N	A	D	P	V	E	A	H	D	V	Q	P	E	Q	L	D	I	A	T	G	M	Y	L	I	E	E	A	T	T	L	T	.	.	.	.	.	I	R	R	P	E	H	T	W	A	G	L	R	S	F	V	A	D	G
Template Known Secondary structure		T							T	T	S	S							T	T														S	S																				B	S			.	.	.	.	.					S											T	T	S
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		1237	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.						.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		L	P	M	V	G	N	V	P	D	Y	E	A	T	L	V	E	Y	A	S	L	A	E	Q	K	D	E	A	V	S	A	P	V	F	D	D	L	F	M	F	A	A	L	G	S	R	G	L	C	S	A	P	L	C	A	E	I	L	A	A	Q	M	S	D	E	P	I	P	M	D	A	S	T	L	.	.	.	.	A	A	L
Query Conservation																																																																											.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	V	A	G	Y	A	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	G	F	F	W	V	A	A	Q	G	G	Y	G	I	Q	T	S	A	A	M	G	E	A	S	A	A	L	I	R	H	Q	P	L	P	A	H	L	R	E	H	G	L	D	E	A	M	L
Template Known Secondary structure									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T								T	T		T	T	T	T													T	T										T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1312	.	.	.	.	.	.	.	1320																								.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.
		650	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	N	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	P	R	R	L
Template Known Secondary structure			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		1369	1370	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions