Job Description P77182 Confidence 99.52% Date Thu Jan 5 12:26:05 GMT 2012 Rank 41 Aligned Residues 347 % Identity 15% Template c3nksA_ PDB info PDB header:oxidoreductase/oxidoreductase inhibitor Chain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: structure of human protoporphyrinogen ix oxidase Resolution 1.90 Å

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		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.			.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.			.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																									.	.																			.	.
Query SS confidence																									.	.																			.	.
Query Sequence		R	E	A	A	I	I	G	G	G	I	A	S	A	L	L	S	L	A	L	L	R	R	G	.	.	W	Q	V	T	L	Y	C	A	D	E	A	P	A	L	G	A	S	G	.	.	N	R	Q	G	A	L	Y	P	L	L	S	K	H	D	E	A	L	N	R	F	F	S	N	A	F	T	F	A	R	R	F	Y	D	Q	L
Query Conservation																									.	.																			.	.
Alig confidence																									.	.																			.	.																.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		R	T	V	V	V	L	G	G	G	I	S	G	L	A	A	S	Y	H	L	S	R	A	P	C	P	P	K	V	V	L	V	E	S	S	E	R	L	G	G	W	I	R	S	V	R	G	P	N	G	A	I	F	E	L	G	P	R	G	I	R	.	.	.	.	P	A	G	A	L	G	A	R	T	L	L	L	V	S	E	L
Template Known Secondary structure										B												T	S	S	S									S	S	S	S	S	B	T	T							T	T	S					S	S				B		.	.	.	.																T
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.																								.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Query Sequence		P	V	K	F	D	H	D	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	V	T	Q	L	G	W	D	E	K	S	Q	H	K	I	A	Q	M	L	S	M	D	L	P	A	E	L	A	V	A	V	E	A	N	A	V	E	Q	I	T	G	V	.	.	.	.	.	.
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																												.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	D	S	E	V	L	P	V	R	G	D	H	P	A	A	Q	N	R	F	L	Y	V	G	G	A	L	H	A	L	P	T	G	L	R	G	P	S	P	P	F	S	K	P	L	F	W	A	G	L	R	E	L	T	K	P	R	G	K	E	P	D	E	T	V	H	S	F	A	Q	R	R	L	G	P	E	V	A	S	L
Template Known Secondary structure		T		G	G	G						T	T	S											T	T								S	S					T	T	S		S		S	S					T	T	T	T	S					S	S			B
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
																																																							392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	T	N	C	S	G	I	T	Y	P	Q	G	G	W	L	C	P	A	E	L	T	R	N	V	L	E	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																																																																					.	.	.
Template Sequence		A	M	D	S	L	C	R	G	V	F	A	G	N	S	R	E	L	S	I	R	S	C	F	P	S	L	F	Q	A	E	Q	T	H	R	S	I	L	L	G	L	L	L	G	Q	P	D	S	A	L	I	R	Q	A	L	A	E	R	W	S	Q	W	S	L	R	G	G	L	.	.	.	E	M	L	P	Q	A	L	E	T	H
Template Known Secondary structure		T										S	S		T	T	T	B	B																S																						T	T		S					T	T		T	.	.	.	T
Template Predicted Secondary structure																																																																					.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.				.	230	.	.	.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.											.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	Q	Q	G	L	Q	I	Y	Y	Q	Y	Q	L	Q	N	L	S	R	K	D	D	C	W	L	L	N	F	A	G	D	Q	Q	A	T	H	S	V	V	V	L	A	N	G	H	Q	I	.	.	.	.	.	.	.	.	.	.	S	R	F	S	Q	T	S	T	L	P	V	Y	S	V	A	G	Q	V	S	H	I	P	T
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	S	R	G	V	S	V	L	R	G	Q	P	V	C	G	L	S	L	Q	A	E	G	R	W	K	V	S	L	R	D	S	S	L	E	A	D	H	V	I	S	A	I	P	A	S	V	L	S	E	L	L	P	A	E	A	A	P	L	A	R	A	L	S	A	I	T	A	V	S	V	A	V	V	N	L	Q	Y	Q	G
Template Known Secondary structure					T	T						S										G	G	G							S	S						S						S									S		G	G	G									T														T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		489	490													.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.									.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		T	P	.	.	.	.	.	.	.	.	.	.	.	.	E	L	A	E	L	K	Q	V	L	C	Y	D	G	Y	L	T	P	Q	N	P	A	N	Q	H	H	C	I	G	A	S	Y	H	.	.	.	.	.	.	.	.	R	G	S	E	D	T	A	Y	S	E	D	D	Q	Q	Q	N	R	Q	R	L	I	D	C	F	P	Q
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.	.	.																										.
Template Conservation																																																																																	.
Template Sequence		A	H	L	P	V	Q	G	F	G	H	L	V	P	S	S	E	D	P	G	V	L	G	I	V	Y	D	S	V	A	F	P	E	Q	D	G	S	P	P	G	L	R	V	T	V	M	L	G	G	S	W	L	Q	T	L	E	A	S	G	C	V	L	S	Q	E	L	F	Q	Q	R	A	Q	E	A	A	A	T	Q	L	G	.
Template Known Secondary structure					S	S		S	S						T	T	T		S	S												G	G	G	S	T	T	T	T																			S	S																						.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.		.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		A	Q	W	A	K	E	V	D	V	S	D	K	E	A	R	C	G	V	R	C	A	T	R	D	H	L	P	M	V	G	N	V	P	D	Y	E	A	T	L	V	E	Y	A	S	L	A	E	Q	K	D	E	A	V	S	A	P	V	F	D	D	L	F	M	F	.	A	A	L	G	S	R	G	L	C	S	A	P	L	C	A
Query Conservation																																																																		.
Alig confidence		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	L	K	E	M	P	S	H	C	L	V	H	L	H	K	N	C	I	P	Q	Y	T	L	G	H	W	Q	K	L	E	S	A	R	Q	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	H	R	L	P	L	T	L	A	G	A	S	Y	E	G	V	A	V	N	D	C	I	E	S	G
Template Known Secondary structure		.			S			S															B	T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T		S					S	T	T	T	S			S
Template Predicted Secondary structure		.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.																			.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		628	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	L	A	A	Q	M	S	D	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Q	A	A	V	S	V	L	G	T	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.