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Job DescriptionP77182
Confidence100.00%DateThu Jan 5 12:26:05 GMT 2012
Rank12Aligned Residues350
% Identity14%Templatec3dmeB_
PDB info PDB header:structural genomics, unknown functionChain: B: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from2 bordetella pertussis. northeast structural genomics target3 ber141
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   263......270.........280.........290.........300.........310........ .320.........330.........340.
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Query Sequence  SKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKH. DEALNRFFSNAFTFARRFYDQLP
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Template Sequence  TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARG
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   342.......350.........360.........370. ........380.........390.........400.........410.........
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Query Sequence  VKFDHDWCGVTQLGWDEKSQHKIAQMLSMD. . LPAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELA
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Template Sequence  V. . PHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDA
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   83 ......90.........100.........110.........120.........130.........140.........150.........160
 
   420.........430.........440....... ..450.........460.........470... ......480.........
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Query Sequence  QQQGLQIYYQYQLQNLSRKDDCWLLNFA. . . GDQQATHSVVVLANGHQISRFSQTST. . . . . . . LPVYSVAGQVSHIPTT
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Template Sequence  ESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGR
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   490......... 500.........510.........520.. .......530.........540.........550.........560......
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Query Sequence  PELAELKQVL. . CYDGYLTPQNPANQHHCIGASYH. RGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGV
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Template Sequence  APFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWIATEDYTLDPRRADVFYAAVRSYWPALP. . . . . DGALAPGYTGI
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   241........250.........260.........270.........280.........290.........300.... .....310.....
 
   567..570.........580.........590.........600.........610.........620.........630.....
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Query Sequence  RCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAPLCAEILAAQMS
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Template Sequence  RPKISGPHEPAA. . . . . . . . . . . . . . . . DFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARLA
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   316...320....... ..330.........340.........350.........360........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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