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Job DescriptionP77182
Confidence99.31%DateThu Jan 5 12:26:05 GMT 2012
Rank74Aligned Residues206
% Identity15%Templatec3cpiH_
PDB info PDB header:protein transportChain: H: PDB Molecule:rab gdp-dissociation inhibitor; PDBTitle: crystal structure of yeast rab-gdi
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   260.........270.........280.........290.........300.........310 .
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Query Sequence  TGSSKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . L
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Template Sequence  TIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDL
Template Known Secondary structure 



B
S

STT


SSSSS
TTS


SS


T

GGG

S
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   312.......320...... ...330.........340......
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Query Sequence  YPLLSKHDEALNRFF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SNAFTFARRFYDQLPVKFDH
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Template Sequence  IPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLS
Template Known Secondary structure  S

BTTSTGGGS


STT


S
TTS

BTTBGG
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   85....90.........100.........110.........120.........130.........140.........150.........160....
 
   347..350..... ....360.........370.........380.........390... ......400.........410
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Query Sequence  DWCGVTQLG. . . . . . . . . . . WDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVAT. . . . . NCSGITYPQGGWLCPAE
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Template Sequence  THQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGL. . . GE
Template Known Secondary structure  GGTT

TTTSBT

TS

SSSGGGGSBSS
STT
T...T
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   165....170.........180.........190.........200.........210.........220.........230......... 240.
 
   411........420.........430....... ..440.........450.........460........
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Query Sequence  LTRNVLELAQQQGLQIYYQYQLQNLSR. . KDDCWLLNFAGDQQATHSVVVLANGHQISRF
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Template Sequence  LPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKC
Template Known Secondary structure  TT

S




TTT

TT
S
GGG
GGG
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   242.......250.........260.........270.........280.........290.........300.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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