Job Description P77182 Confidence 99.49% Date Thu Jan 5 12:26:05 GMT 2012 Rank 46 Aligned Residues 281 % Identity 12% Template c3cgvA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:geranylgeranyl reductase related protein; PDBTitle: crystal structure of geranylgeranyl bacteriochlorophyll reductase-like2 fixc homolog (np_393992.1) from thermoplasma acidophilum at 1.60 a3 resolution Resolution 1.60 Å

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		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	A	I	I	G	G	G	I	A	S	A	L	L	S	L	A	L	L	R	R	G	W	Q	V	T	L	Y	C	A	D	E	A	P	A	L	G	A	S	G	N	R	Q	G	A	L	Y	P	L	L	S	K	H	D	E	A	L	N	R	F	F	S	N	A	F	T	F	A	R	R	F	Y	D	Q	L	P	V	K	F	D
Query Conservation
Alig confidence																																				.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	L	V	V	G	G	G	P	G	G	S	T	A	A	R	Y	A	A	K	Y	G	L	K	T	L	X	I	E	K	R	P	E	I	.	.	G	S	P	V	R	C	G	E	G	L	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	I	L	N	E	A	D	I	K	A	D	R	S	F	I
Template Known Secondary structure									S													T	T								S	S	S	S	T	.	.	T		S			S						T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T					T	T	T
Template Predicted Secondary structure																																				.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50																		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	W	C	G	V	T	Q	L	G	W	D	E	K	S	Q	H	K	I	A	Q	M	L	S	M	D	L	P	A	E	L	A	V	A	V	E	A	N	A	V	E	Q	I	T	G	V	A	T	N	C	S	G	I	T	Y	P	Q	G	G	W	L	C	P	A	E	L	T	R	N	V	L	E	L	A	Q	Q	Q	G	L	Q
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	N	E	V	K	G	A	R	I	Y	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	K	R	P	I	I	L	Q	N	E	V	G	Y	V	L	E	R	D	K	F	D	K	H	L	A	A	L	A	A	K	A	G	A	D
Template Known Secondary structure						S							T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T		S	S																													T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.																																		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.					.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.				.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.																						.	.	.
Query SS confidence																					.	.	.	.																						.	.	.
Query Sequence		I	Y	Y	Q	Y	Q	L	Q	N	L	S	R	K	D	D	C	W	L	L	.	.	.	.	N	F	A	G	D	Q	Q	A	T	H	S	V	V	V	L	A	N	G	H	Q	I	.	.	.	S	R	F	S	Q	T	S	T	L	P	V	Y	S	V	A	G	Q	V	S	H	I	P	T	T	P	E	L	A	E	L	K	Q	V
Query Conservation																					.	.	.	.																						.	.	.
Alig confidence																					.	.	.	.																						.	.	.
Template Conservation
Template Sequence		V	W	V	K	S	P	A	L	G	V	I	K	E	N	G	K	V	A	G	A	K	I	R	H	N	N	E	I	V	D	V	R	A	K	X	V	I	A	A	D	G	F	E	S	E	F	G	R	W	A	G	L	K	S	V	I	L	A	R	N	D	I	I	S	A	L	Q	Y	R	X	I	N	V	D	V	D	P	D	Y	T
Template Known Secondary structure				S	S										T	T										T	T																T	T								T			T	T				G	G	G											S					T	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		499							500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure			.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.
Query Sequence		L	.	.	.	.	.	.	C	Y	D	G	Y	L	T	P	Q	N	P	A	N	Q	H	H	C	I	G	A	S	Y	H	R	G	S	E	D	T	A	Y	S	E	D	D	Q	Q	Q	N	R	Q	R	L	I	D	C	F	P	Q	A	Q	W	A	K	E	V	D	V	S	D	K	E	A	R	C	G	V	R	C	A	T	R	D
Query Conservation			.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.																														.	.	.																				.	.	.	.	.
Template Conservation																																						.	.	.																				.	.	.	.	.
Template Sequence		D	F	Y	L	G	S	I	A	P	A	G	Y	I	W	V	F	P	K	G	E	G	X	A	N	V	G	I	G	S	S	I	N	W	I	H	N	.	.	.	R	F	E	L	K	N	Y	L	D	R	F	I	E	N	H	P	G	L	K	.	.	.	.	.	K	G	Q	D	I	Q	L	V	T	G	G	V	S	V	S	K	V
Template Known Secondary structure						S	T	T	S	T	T										T	T										T	T	T		S		.	.	.														T						.	.	.	.	.	T	S
Template Predicted Secondary structure																																						.	.	.																				.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.				.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.						.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.								.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.
Query Sequence		H	L	P	M	V	G	N	V	P	D	Y	E	A	T	L	V	E	Y	A	S	L	A	E	Q	K	D	E	A	V	S	A	P	V	F	D	D	L	F	M	F	A	A	.	.	.	.	.	.	.	L	G	S	R	G	L	C	S	A	P	L	C	A	E	I	L	A	A	Q	M
Query Conservation																																												.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	X	P	I	T	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	L	X	L	V	G	D	A	A	R	L	I	D	P	I	T	G	G	G	I	A	N	A	I	V	S	G	X	Y	A	A	Q	V	T
Template Known Secondary structure			S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T					G	G	G	G	T		S		T	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		270	.	.	.	.	.																													.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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