Job Description P77182 Confidence 98.50% Date Thu Jan 5 12:26:05 GMT 2012 Rank 238 Aligned Residues 158 % Identity 20% Template c3bwbA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of the apo form of spermidine synthase from2 trypanosoma cruzi at 2.5 a resolution Resolution 2.50 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	T	P	V	S	R	D	F	D	D	V	Y	F	S	N	D	N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	V	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	C	I	Q	V	T	D	Y	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	Y	H	E	V	L	G	H	T	S	L	C	S	H	P	K	P	E	R	V	L	I	I	G	G	G	D	G	G	V	L	R	E	V	L	R	.	.	.	.	.	.	.	.	.	.	.	.	H	G	T	V	E
Template Known Secondary structure		T	T						T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S	S											T	T	S							T	T	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.																.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.													.	.	.	.	120
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	E	G	R	V	T	L	D	L	W	F	G	D	I	N	E	L	T	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W
Query Conservation
Alig confidence								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.
Template Conservation								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.
Template Sequence		H	C	D	L	V	D	.	.	.	I	D	G	E	V	X	E	Q	S	K	Q	H	F	P	Q	I	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	A	D	P	R	A	T	.	.	V	R	V	G	D	G	L	A	F	V	R	Q	T	.	.	.	P	D	N	T	Y	D	V	V
Template Known Secondary structure								.	.	.	S																	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G		T	T			.	.				S								T	S	.	.	.		T	T
Template Predicted Secondary structure								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.
Template SS confidence
		121	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.																				.	.	.	.	.	150	.	.			.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.
Query Sequence		F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	F	T	S	A	.	.	.	.	.	.	.	.	G	F	V	R	R	G	L	Q	D	A	G	F	T	M	Q	K
Query Conservation																																								.	.	.	.	.	.	.	.
Alig confidence									.	.																														.	.	.	.	.	.	.	.
Template Conservation									.	.
Template Sequence		I	I	D	T	T	D	P	.	.	A	S	K	L	F	G	E	A	F	Y	K	D	V	L	R	I	L	K	P	D	G	I	C	C	N	Q	G	E	S	I	W	L	D	L	E	L	I	E	K	X	S	R	F	I	R	E	T	G	F	A	S	V	Q
Template Known Secondary structure						S			.	.				S	S																									T	T	T																T		S
Template Predicted Secondary structure									.	.
Template SS confidence
		174	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions