Job Description P77182 Confidence 98.64% Date Thu Jan 5 12:26:05 GMT 2012 Rank 197 Aligned Residues 159 % Identity 19% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	T	P	V	S	R	D	F	D	D	V	Y	F	S	N	D	N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	V	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	V	I	Q	L	T	E	R	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	A	Y	Q	E	X	I	T	H	L	P	L	C	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	.	.	.	.	.	.	.	.	.	.	.	.	H	A	S	I	E
Template Known Secondary structure		T	T						S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T					T	T	S	S	S								S		S	S	S							T	T	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.																.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140													.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	E	G	R	V	T	L	D	L	W	F	G	D	I	N	E	L	T	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W
Query Conservation
Alig confidence								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.
Template Conservation								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.
Template Sequence		Q	I	D	X	C	E	.	.	.	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	E	D	P	R	V	N	.	.	L	V	I	G	D	G	V	A	F	L	K	N	A	.	.	.	A	E	G	S	Y	D	A	V
Template Known Secondary structure								.	.	.														T	T	T	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	T		T	T			.	.				S								S	S	.	.	.		S	S
Template Predicted Secondary structure								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.
Template SS confidence
		146	.	.	.	150	.				.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.																				170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190				.	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure														.																											.	.	.	.	.	.	.	.
Query SS confidence														.																											.	.	.	.	.	.	.	.
Query Sequence		F	L	D	G	F	A	P	A	K	N	P	D	.	M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	F	T	S	A	.	.	.	.	.	.	.	.	G	F	V	R	R	G	L	Q	D	A	G	F	T	M	Q
Query Conservation														.																											.	.	.	.	.	.	.	.
Alig confidence														.																											.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T	Q	A	E	S	L	W	L	H	X	D	I	I	E	D	I	V	S	N	C	R	E	I	F	K	G	S	V
Template Known Secondary structure								S	S	S	G	G	G	G	G	G	S																								T	T	T																	S	S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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