Job Description P77182 Confidence 98.11% Date Thu Jan 5 12:26:05 GMT 2012 Rank 278 Aligned Residues 150 % Identity 15% Template c2hteB_ PDB info PDB header:transferase Chain: B: PDB Molecule:spermidine synthase; PDBTitle: the crystal structure of spermidine synthase from p. falciparum in2 complex with 5'-methylthioadenosine Resolution 2.00 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	T	P	V	S	R	D	F	D	D	V	Y	F	S	N	D	N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	V	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	G	V	I	Q	L	T	E	K	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	Y	H	E	M	M	T	H	V	P	M	T	V	S	K	E	P	K	N	V	L	V	V	G	G	G	D	G	G	I	I	R	E	L	C	K	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	S	V	E
Template Known Secondary structure		T	T						T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T	S	S	S										T	T									T	.	.	.	.	.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.																.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.													.	100	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	I	S	F	E	K	F	P	L	T	R	A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	E	G	R	V	T	L	D	L	W	F	G	D	I	N	E	L	T	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W
Query Conservation
Alig confidence								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.	.
Template Conservation								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.	.
Template Sequence		N	I	D	I	C	E	.	.	.	I	D	E	T	V	I	E	V	S	K	I	Y	F	K	N	I	S	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	E	D	K	R	V	N	.	.	V	F	I	E	D	A	S	K	F	L	E	N	V	.	.	.	.	T	N	T	Y	D	V	I
Template Known Secondary structure								.	.	.	S																	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	S	T	T			.	.				S								T		.	.	.	.		S
Template Predicted Secondary structure								.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.	.
Template SS confidence
		104	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.																				.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.
Query Sequence		F	L	D	G	F	A	P	A	K	N	P	D	M	W	T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	F	T	S	A	.	.	.	.	.	.	.	.	G	F	V	R	R	G	L	Q	D	A	G	F	T	M	Q
Query Conservation																																								.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence		I	V	D	S	S	D	N	.	.	.	.	.	.	.	.	Q	N	F	Y	E	K	I	Y	N	A	L	K	P	N	G	Y	C	V	A	Q	C	E	S	L	W	I	H	V	G	T	I	K	N	M	I	G	Y	A	K	K	L	F	K	K	V	E
Template Known Secondary structure									.	.	.	.	.	.	.	.																								T	T	T														T	T		S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.									.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions