Return to main results Retrieve Phyre Job Id

Job DescriptionP77182
Confidence99.48%DateThu Jan 5 12:26:05 GMT 2012
Rank48Aligned Residues175
% Identity12%Templatec1yq4A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:succinate dehydrogenase flavoprotein subunit; PDBTitle: avian respiratory complex ii with 3-nitropropionate and ubiquinone
Resolution2.33 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   266...270.........280.........290.........300.........310.........320 .....
Predicted Secondary structure 


























....................
Query SS confidence 






















































. . . . . . . . . . . . . . . . . . . .




Query Sequence  EAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDE. . . . . . . . . . . . . . . . . . . . ALNRF
Query Conservation   











 
  

 

  




       



  

 
 
 
     ....................   

Alig confidence 































.





















....................




Template Conservation 







 


 

  


 
  
 



  .  

 
  
 


 
       

      
       
 
  

  
Template Sequence  DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF. PTRSHTVAAQGGINAALGNMEDDNWRWHFYDTVKGSDWLGDQDAIHY
Template Known Secondary structure  S

STT

SS
.GGGSGGGG

S




SSS


TTT
S
Template Predicted Secondary structure 









.
























Template SS confidence 















































































   20.........30.........40.........50. ........60.........70.........80.........90........
 
   326...330.........340.........350.........360.........370.........380.........390.........400.....
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  FSNAFTFARRFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVATNCSGITYPQGGW
Query Conservation     
      
   
         
 
 

                                         

  
  
 
Alig confidence 































...........................




















Template Conservation      
   
  
   

 
     
       ...........................

            
      
Template Sequence  MTEQAPAAVIELENYGMPFSRTEEGKIYQRAF. . . . . . . . . . . . . . . . . . . . . . . . . . . GGQSLQFGKGGQAHRCCCVAD
Template Known Secondary structure  TT



B
TTSSB


...........................TT
BSGGGTS
B



STT
Template Predicted Secondary structure 














...........................


















Template SS confidence 















































































   99100.........110.........120.........130 .........140.........150.
 
   406...410.........420.........430.........440.........450 .........460........
Predicted Secondary structure 














......







Query SS confidence 












































. . . . . .

















Query Sequence  LCPAELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQ. . . . . . QATHSVVVLANGHQISRF
Query Conservation 
 
  
  

       
  
     
  
               ......   

 

 


  
  
Alig confidence 












































......

















Template Conservation    
  
   
       

 
     
  

   
 
 

       
    
 









     
Template Sequence  RTGHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTY
Template Known Secondary structure 
TTS

TTTTTTT
S




GGGS
Template Predicted Secondary structure 























Template SS confidence 




































































   152.......160.........170.........180.........190.........200.........210.........220
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions