Job Description P77182 Confidence 100.00% Date Thu Jan 5 12:26:05 GMT 2012 Rank 14 Aligned Residues 353 % Identity 15% Template c1ryiB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:glycine oxidase; PDBTitle: structure of glycine oxidase with bound inhibitor glycolate Resolution 1.80 Å

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		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.		.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		S	S	K	R	E	A	A	I	I	G	G	G	I	A	S	A	L	L	S	L	A	L	L	R	R	G	W	Q	V	T	L	Y	C	A	D	E	A	P	A	L	G	A	S	G	N	R	Q	G	A	L	Y	P	L	L	S	.	K	H	D	E	A	L	N	R	F	F	S	N	A	F	T	F	A	R	R	F	Y	D	Q	L
Query Conservation																																																									.
Alig confidence																																						.																			.
Template Conservation																																						.
Template Sequence		K	R	H	Y	E	A	V	V	I	G	G	G	I	I	G	S	A	I	A	Y	Y	L	A	K	E	N	K	N	T	A	L	F	E	S	G	T	.	M	G	G	R	T	T	S	A	A	A	G	M	L	G	A	H	A	E	C	E	E	R	D	A	F	F	D	F	A	M	H	S	Q	R	L	Y	K	G	L	G	E	E	L
Template Known Secondary structure			S										S													T	T								S	S	S	.	T	T	T	T								B			G	G	G			S	S															T	T	T
Template Predicted Secondary structure																																						.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
						341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure		.	.	.	.																																																			.	.
Query SS confidence		.	.	.	.																																																			.	.
Query Sequence		.	.	.	.	P	V	K	F	D	H	D	W	C	G	V	T	Q	L	G	W	D	E	K	S	Q	H	K	I	A	Q	M	L	S	M	D	L	P	A	E	L	A	V	A	V	E	A	N	A	V	E	Q	I	T	G	.	.	V	A	T	N	C	S	G	I	T	Y	P	Q	G	G	W	L	C	P	A	E	L	T	R	N
Query Conservation		.	.	.	.																																																			.	.
Alig confidence		.	.	.	.																											.	.	.	.																					.	.
Template Conservation																																.	.	.	.
Template Sequence		Y	A	L	S	G	V	D	I	R	Q	H	N	G	G	M	F	K	L	A	F	S	E	E	D	V	L	Q	L	R	Q	.	.	.	.	M	D	D	L	D	S	V	S	W	Y	S	K	E	E	V	L	E	K	E	P	Y	A	S	G	D	I	F	G	A	S	F	I	Q	D	D	V	H	V	E	P	Y	F	V	C	K	A
Template Known Secondary structure												B									S	S									T	.	.	.	.	T	T	T	S	T	T														T	T	S		T	T								T	T			B
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.			.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		V	L	E	L	A	Q	Q	Q	G	L	Q	I	Y	Y	Q	Y	Q	L	Q	N	L	S	R	K	D	D	C	W	L	L	N	F	A	G	D	Q	Q	A	T	H	S	V	V	V	L	A	N	G	H	Q	I	S	R	F	S	Q	T	S	T	L	.	.	P	V	Y	S	V	A	G	Q	V	S	H	I	P	T	T	P	E	L
Query Conservation																																																														.	.
Alig confidence																																						.																								.	.																	.	.
Template Conservation																																						.																																										.	.
Template Sequence		Y	V	K	A	A	K	M	L	G	A	E	I	F	E	H	T	P	V	L	H	V	E	R	D	G	E	A	L	F	I	K	T	P	S	G	D	.	V	W	A	N	H	V	V	V	A	S	G	V	W	S	G	M	F	F	K	Q	L	G	L	N	N	A	F	L	P	V	K	G	E	C	L	S	V	W	N	D	D	.	.
Template Known Secondary structure									T	T					T	T									S	S	S	S						T	T			.											G	G	G	T							T	T																			S	.	.
Template Predicted Secondary structure																																						.																																										.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	K	Q	V	L	C	Y	D	G	Y	L	T	P	Q	N	P	A	N	Q	H	H	C	I	G	A	S	Y	H	R	G	S	E	D	T	A	Y	S	E	D	D	Q	Q	Q	N	R	Q	R	L	I	D	C	F	P	Q	A	Q	W	A	K	E	V	D	V	S	D	K	E	A	R	C	G	V	R	C	A	T	R	D
Query Conservation
Alig confidence		.																																																										.	.	.	.	.
Template Conservation		.																																																										.	.	.	.	.
Template Sequence		.	I	P	L	T	K	T	L	Y	H	D	H	C	Y	I	V	P	R	K	S	G	R	L	V	V	G	A	T	M	K	P	G	D	W	S	E	T	P	D	L	G	G	L	E	S	V	M	K	K	A	K	T	M	L	P	A	I	Q	.	.	.	.	.	N	M	K	V	D	R	F	W	A	G	L	R	P	G	T	K	D
Template Known Secondary structure		.	S				S					T	T							T	T	S											T					S																		G	G	G	G	.	.	.	.	.	G	S														T	T
Template Predicted Secondary structure		.																																																										.	.	.	.	.
Template SS confidence
			234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	P	M	V	G	N	V	P	D	Y	E	A	T	L	V	E	Y	A	S	L	A	E	Q	K	D	E	A	V	S	A	P	V	F	D	D	L	F	M	F	A	A	L	G	S	R	G	L	C	S	A	P	L	C	A	E	I	L	A	A	Q	M	S	D	E	P	I	P	M	D	A	S	T	L	A	A	L	N	P	N
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.
Template Sequence		G	K	P	Y	I	G	R	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	D	S	R	I	L	F	A	A	G	H	F	R	N	G	I	L	L	A	P	A	T	G	A	L	I	S	D	L	I	M	N	K	E	V	N	.	.	Q	D	W	L	H	A	F	R	I	D
Template Known Secondary structure		S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T											S	S		T	T	T	T													T	T					.	.							T		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.
Template SS confidence
		308	.	310	.	.	.	.	.																								.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.			.	.	.	.	.	.	.	360	.	.
		653
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		363

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions