Job Description P07026 Confidence 100.00% Date Thu Jan 5 11:00:07 GMT 2012 Rank 3 Aligned Residues 222 % Identity 31% Template c3sztB_ PDB info PDB header:transcription Chain: B: PDB Molecule:quorum-sensing control repressor; PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone Resolution 2.55 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	M	L	L	R	F	Q	R	M	E	T	A	E	E	V	Y	H	E	I	E	L	Q	A	Q	Q	L	E	Y	D	Y	Y	S	L	C	V	R	H	P	V	P	F	T	R	P	K	V	A	F	Y	T	N	Y	P	E	A	W	V	S	Y	Y	Q	A	K	N	F	L	A	I	D	P	V	L	N	P	E	N	F	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	Y	L	E	I	L	S	R	I	T	T	E	E	E	F	F	S	L	V	L	E	I	C	G	N	Y	G	F	E	F	F	S	F	G	A	R	A	P	F	P	L	T	A	P	K	Y	H	F	L	S	N	Y	P	G	E	W	K	S	R	Y	I	S	E	D	Y	T	S	I	D	P	I	V	R	H	G	L	L	E	Y
Template Known Secondary structure				S					T	T			S														T	T	T		S	B										S	T	T	S									S											T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		G	H	L	M	W	N	D	D	L	F	S	E	A	Q	P	L	W	E	A	A	R	A	H	G	L	R	R	G	V	T	Q	Y	L	M	L	P	N	R	A	L	G	F	L	S	F	S	R	C	S	A	R	E	I	P	I	L	S	D	E	L	Q	L	K	M	Q	L	L	V	R	E	S	L	M	A	L	M	R	L	N	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.
Template Sequence		T	P	L	I	W	R	F	.	.	.	.	.	.	.	.	F	W	E	E	A	L	H	H	G	I	R	H	G	W	S	I	P	V	R	G	K	Y	G	L	I	S	M	L	S	L	V	R	S	S	S	I	A	A	T	E	I	L	E	K	E	S	F	L	L	W	I	T	S	M	L	Q	A	T	F	G	D	L	L	A	P
Template Known Secondary structure		S							.	.	.	.	.	.	.	.							T	T	T		S										G	G	G
Template Predicted Secondary structure									.	.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.									.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	V	M	T	P	E	M	N	F	S	K	R	E	K	E	I	L	R	W	T	A	E	G	K	T	S	A	E	I	A	M	I	L	S	I	S	E	N	T	V	N	F	H	Q	K	N	M	Q	K	K	I	N	A	P	N	K	T	Q	V	A	C	Y	A	A	A	T	G	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	V	P	E	S	N	V	R	L	T	A	R	E	T	E	M	L	K	W	T	A	V	G	K	T	Y	G	E	I	G	L	I	L	S	I	D	Q	R	T	V	K	F	H	I	V	N	A	M	R	K	L	N	S	S	N	K	A	E	A	T	M	K	A	Y	A	I	G	L	L
Template Known Secondary structure					G	G	G	G																T	T											T																	T	T		S	S												T	T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions