Job Description P07026 Confidence 99.75% Date Thu Jan 5 11:00:07 GMT 2012 Rank 8 Aligned Residues 153 % Identity 20% Template c3qp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir ligand-binding domain bound to the native2 ligand c6-hsl Resolution 1.55 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		T	M	L	L	R	F	Q	R	M	E	T	A	E	E	V	Y	H	E	I	E	L	Q	A	Q	Q	L	E	Y	D	Y	Y	S	L	C	V	R	.	.	.	H	P	V	P	F	T	R	P	K	V	A	F	Y	T	N	Y	P	E	A	W	V	S	Y	Y	Q	A	K	N	F	L	A	I	D	P	V	L	N	P	E	N	F
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.
Template Conservation
Template Sequence		E	W	I	H	M	A	G	H	I	E	T	E	N	E	L	K	A	F	L	D	Q	V	L	S	Q	A	P	S	E	R	L	L	L	A	L	G	R	L	N	N	Q	N	Q	I	Q	R	L	E	R	V	L	N	V	S	Y	P	S	D	W	L	D	Q	Y	M	K	E	N	Y	A	Q	H	D	P	I	L	R	I	H	L	G
Template Known Secondary structure								T	T			S													T	T	S	S		S											T	T	S											S	S	S											T	T	G	G	G	T		G	G	G	G	S		T	T
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		89	90	.	.	.	.	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure											.	.	.	.																																			.
Query SS confidence											.	.	.	.																																			.
Query Sequence		S	Q	G	H	L	M	W	N	D	.	.	.	.	D	L	F	S	E	A	Q	P	L	W	E	A	A	R	A	H	G	L	R	R	G	V	T	Q	Y	L	M	L	P	N	R	A	L	G	.	F	L	S	F	S	R	C	S	A	R	E	I	P	I	L	S	D	E	L	Q	L	K	M	Q	L	L	V	R	E	S	L	M
Query Conservation											.	.	.	.																																			.
Alig confidence				.							.	.	.	.																																			.														.	.	.	.
Template Conservation				.																																																											.	.	.	.
Template Sequence		Q	G	.	P	V	M	W	E	E	R	F	N	R	A	K	G	A	E	E	K	R	F	I	A	E	A	T	Q	N	G	M	G	S	G	I	T	F	S	A	A	S	E	R	N	N	I	G	S	I	L	S	I	A	G	R	E	P	G	R	N	A	.	.	.	.	A	L	V	A	M	L	N	C	L	T	P	H	L	H	Q
Template Known Secondary structure		S		.										T			S													T	T		S	S									T	T	T	T									S	S	T	G	G	G			.	.	.	.
Template Predicted Secondary structure				.																																																											.	.	.	.
Template SS confidence
		106	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.					.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		164	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	M	R	L	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	I	R	V	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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