Job Description P07026 Confidence 87.99% Date Thu Jan 5 11:00:07 GMT 2012 Rank 217 Aligned Residues 188 % Identity 12% Template c3c2wB_ PDB info PDB header:signaling protein Chain: B: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of the photosensory core domain of p.2 aeruginosa bacteriophytochrome pabphp in the pfr state Resolution 2.90 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.															60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	F	F	S	W	R	R	T	M	L	L	R	F	Q	R	M	E	T	A	E	E	V	Y	H	E	I	E	L	Q	A	Q	Q	L	.	E	Y	D	Y	Y	S	L	C	V	R	H	P	V	P	F	T	R	P	K	V	A	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	N	Y	P	E	A	W	V	S
Query Conservation																																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	T	L	N	A	Q	R	I	I	A	Q	V	Q	L	H	N	D	T	A	S	L	L	S	N	V	T	D	E	L	R	R	M	T	G	Y	D	R	V	M	A	Y	R	F	R	H	D	D	S	G	E	V	V	A	E	S	R	R	E	D	L	E	S	Y	L	G	Q	R	Y	P	A	S	D	I	P	A	Q	A	R	R
Template Known Secondary structure																																						S									T	T	S											T	T	S				T	T		B			G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.																.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Y	Q	A	K	N	F	L	A	I	D	P	V	L	N	P	E	N	F	S	Q	G	H	L	M	W	N	D	D	L	F	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Q	P	L	W	E	A	A	R	A	H	G	L	R	R	G	V	T	Q	Y	L	M	L	P	N	R	A	L	G	F	L	S
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		L	Y	I	Q	N	P	I	R	L	I	A	D	V	.	.	.	.	.	.	A	Y	T	P	M	R	V	F	P	A	L	N	P	E	T	N	E	S	F	D	L	S	Y	S	V	L	R	S	V	S	P	I	H	C	E	Y	L	T	N	M	G	V	R	A	S	M	S	I	S	I	V	V	G	G	K	L	W	G	L	F	S
Template Known Secondary structure							S					S		S	.	.	.	.	.	.	S								S	S	B		T	T	T	S	S	B				T	T		S	S	B														T												T	T
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.							.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	R	C	S	A	R	E	I	P	I	L	S	D	E	L	Q	L	K	M	Q	L	L	V	R	E	S	L	M	A	L	M	R	L	N	D	E	I	V	M	T	P	E	M	N	F	S	K	R	E	K	E	I	L	R	W	T	A	E	G	K	T	S	A	E	I	A	M	I	L
Query Conservation
Alig confidence																																									.	.	.	.	.	.
Template Conservation																																									.	.	.	.	.	.
Template Sequence		C	H	H	M	S	P	K	L	I	P	Y	P	V	R	M	S	F	Q	I	F	S	Q	V	C	S	A	I	V	E	R	L	E	Q	G	R	I	A	E	L	.	.	.	.	.	.	L	R	V	S	T	E	R	R	L	A	L	A	R	R	A	R	D	A	D	D	L	F	G	A	L
Template Known Secondary structure					S	S													T	T																					.	.	.	.	.	.														S	T	T	T	S	S		T
Template Predicted Secondary structure																																									.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.							.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions