Job Description P07026 Confidence 100.00% Date Thu Jan 5 11:00:07 GMT 2012 Rank 2 Aligned Residues 229 % Identity 22% Template c2q0oA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	K	D	F	F	S	W	R	R	T	M	L	L	R	F	Q	R	M	E	T	A	E	E	V	Y	H	E	I	E	L	Q	A	Q	Q	L	E	Y	D	Y	Y	S	L	C	V	R	H	P	V	P	F	T	R	P	K	V	A	F	Y	T	N	Y	P	E	A	W	V	S	Y	Y	Q	A	K	N	F	L	A	I	D	P
Query Conservation
Alig confidence								.	.	.	.																																							.	.	.	.	.
Template Conservation								.	.	.	.																																							.	.	.	.	.
Template Sequence		V	N	G	N	L	R	.	.	.	.	S	L	I	D	M	L	E	A	A	Q	D	G	H	M	I	K	I	A	L	R	S	F	A	H	S	C	G	Y	D	R	F	A	Y	L	Q	K	D	G	.	.	.	.	.	T	Q	V	R	T	F	H	S	Y	P	G	P	W	E	S	I	Y	L	G	S	D	Y	F	N	I	D	P
Template Known Secondary structure								.	.	.	.											S																T											T	.	.	.	.	.	T								S											T	T	G	G	G	T
Template Predicted Secondary structure								.	.	.	.																																							.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.					.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.						.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.						.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		V	L	N	P	E	N	F	S	Q	G	H	L	M	W	N	D	D	L	F	S	E	A	.	.	.	.	.	Q	P	L	W	E	A	A	R	A	H	G	L	R	R	G	V	T	Q	Y	L	M	L	P	N	R	A	L	G	F	L	S	F	S	R	C	S	A	R	E	I	P	I	L	S	D	E	L	Q	L	K	M	Q	L
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.																																																					.
Template Conservation																																																																																	.
Template Sequence		V	L	A	E	A	K	R	R	R	D	V	F	F	W	T	A	D	A	W	P	A	R	G	S	S	P	L	R	R	F	R	D	E	A	I	S	H	G	I	R	C	G	V	T	I	P	V	E	G	S	Y	G	S	A	M	M	L	T	F	A	S	P	E	R	K	V	D	I	S	G	V	L	D	P	K	K	A	V	Q	.
Template Known Secondary structure											S						S	T	T	S			S	S														T	T												G	G	G										S	S	S					T	T	T	S								.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	E	S	L	M	A	L	M	R	L	N	D	E	I	V	M	T	P	E	M	N	F	S	K	R	E	K	E	I	L	R	W	T	A	E	G	K	T	S	A	E	I	A	M	I	L	S	I	S	E	N	T	V	N	F	H	Q	K	N	M	Q	K	K	I	N	A	P	N	K	T	Q	V	A	C	Y	A	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	M	M	V	H	Y	Q	L	K	I	I	A	A	K	T	V	L	N	P	K	Q	M	L	S	P	R	E	M	L	C	L	V	W	A	S	K	G	K	T	A	S	V	T	A	N	L	T	G	I	N	A	R	T	V	Q	H	Y	L	D	K	A	R	A	K	L	D	A	E	S	V	P	Q	L	V	A	I	A	K	D
Template Known Secondary structure																T					G	G	G	S														T	T																													T		S	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		237	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	L	V
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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