Job Description P07026 Confidence 63.13% Date Thu Jan 5 11:00:07 GMT 2012 Rank 470 Aligned Residues 158 % Identity 10% Template c2oolA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris Resolution 2.20 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.															.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																						.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	M	L	L	R	F	Q	R	M	E	T	A	E	E	V	Y	H	E	I	.	E	L	Q	A	Q	Q	L	E	Y	D	Y	Y	S	L	C	V	R	H	P	V	P	F	T	R	P	K	V	A	F	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	Y	P	E	A	W	V	S	Y	Y	Q	A	K	N
Query Conservation																						.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	A	I	R	R	L	Q	T	A	A	D	L	P	T	A	C	W	I	A	A	S	E	V	R	R	I	T	G	F	D	R	I	K	V	Y	Q	F	A	A	D	W	S	G	Q	V	I	A	E	D	R	D	S	G	I	P	S	L	L	D	F	H	F	P	S	S	D	I	P	A	Q	S	R	A	L	Y	T	I	N	P
Template Known Secondary structure										T			S																			S									T	T	S											T	T					T	T					G	G	G	S											S
Template Predicted Secondary structure
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		76										.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.
Query Sequence		F	.	.	.	.	.	.	.	.	.	L	A	I	D	P	V	L	N	P	E	N	F	S	Q	G	H	L	M	W	N	D	D	L	F	S	E	A	Q	P	L	W	E	A	A	R	A	H	G	L	R	R	G	V	T	Q	Y	L	M	L	P	N	R	A	L	G	F	L	S	F	S	R	C	S	A	R	E	I	P	I	L
Query Conservation			.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	I	I	P	D	I	G	Y	R	P	S	P	L	V	P	D	I	N	P	R	L	G	G	P	I	D	L	S	F	S	V	L	R	S	V	S	P	T	H	L	E	Y	M	V	N	M	G	M	H	A	A	M	S	I	S	I	V	R	D	N	R	L	W	G	M	I	S	C	H	N	L	T	P	R	F	V	S	Y	E
Template Known Secondary structure						S		T	T								S				T	T	T		S	S				T	T		T	T	B														T												T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	E	L	Q	L	K	M	Q	L	L	V	R	E	S	L	M	A	L	M	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	R	Q	A	C	E	L	I	A	Q	V	L	T	W	Q	I	G	V	L	E	E	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions