Job Description P07026 Confidence 100.00% Date Thu Jan 5 11:00:07 GMT 2012 Rank 1 Aligned Residues 222 % Identity 19% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	R	T	M	L	L	R	F	Q	R	M	E	T	A	E	E	V	Y	H	E	I	E	L	Q	A	Q	Q	L	E	Y	D	Y	Y	S	L	C	V	R	H	P	V	P	F	T	R	P	K	V	A	F	Y	T	N	Y	P	E	A	W	V	S	Y	Y	Q	A	K	N	F	L	A	I	D	P	V	L	N	P	E	N	F
Query Conservation
Alig confidence																																									.	.	.	.	.
Template Conservation																																									.	.	.	.	.
Template Sequence		W	L	D	K	L	T	D	L	A	A	I	E	G	D	E	C	I	L	K	T	G	L	A	D	I	A	D	H	F	G	F	T	G	Y	A	Y	L	H	I	.	.	.	.	.	Q	H	R	H	I	T	A	V	T	N	Y	H	R	Q	W	Q	S	T	Y	F	D	K	K	F	E	A	L	D	P	V	V	K	R	A	R	S
Template Known Secondary structure										T	T																				T		S								.	.	.	.	.		S	S								S											T	T	T	T	T	T									T
Template Predicted Secondary structure																																									.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.						.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure											.	.	.	.	.
Query SS confidence											.	.	.	.	.
Query Sequence		S	Q	G	H	L	M	W	N	D	.	.	.	.	.	D	L	F	S	E	A	Q	P	L	W	E	A	A	R	A	H	G	L	R	R	G	V	T	Q	Y	L	M	L	P	N	R	A	L	G	F	L	S	F	S	R	C	S	A	R	E	I	P	I	L	S	D	E	L	Q	L	K	M	Q	L	L	V	R	E	S	L	M
Query Conservation											.	.	.	.	.
Alig confidence											.	.	.	.	.																																																			.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.
Template Sequence		R	K	H	I	F	T	W	S	G	E	H	E	R	P	T	L	S	K	D	E	R	A	F	Y	D	H	A	S	D	F	G	I	R	S	G	I	T	I	P	I	K	T	A	N	G	F	X	S	X	F	T	X	A	S	D	K	P	V	I	D	I	D	A	V	.	.	.	.	.	A	A	A	A	T	I	G	Q	I	H	A
Template Known Secondary structure				S						S	S	T	T	T	T	S	S		S											T	T	T												G	G	G										S	S	S	S							.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	M	R	L	N	D	E	I	V	M	T	P	E	M	N	F	S	K	R	E	K	E	I	L	R	W	T	A	E	G	K	T	S	A	E	I	A	M	I	L	S	I	S	E	N	T	V	N	F	H	Q	K	N	M	Q	K	K	I	N	A	P	N	K	T	Q	V	A	C	Y	A	A	A	T	G	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	S	F	L	R	T	T	P	T	A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	G	K	T	X	E	E	I	A	D	V	E	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D	V	R	S	K	A	H	L	T	A	L	A	I	R	R	K	L	I
Template Known Secondary structure					T	T	T				S		B																	T	T	T										T	T																		T		S	S											T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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