 |
Job Description | P0A8S1 | Confidence | 64.13% | Date | Thu Jan 5 11:08:37 GMT 2012 |
Rank | 253 | Aligned Residues | 46 |
% Identity | 17% | Template | d1rp3a2 |
SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
Resolution | 2.30 |
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | |
20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | K | R | P | D | Y | R | T | L | Q | A | L | D | A | V | I | R | E | R | . |
G | F | E | R | A | A | Q | K | L | C | I | T | Q | S | A | V | S | Q | R | I | K | Q | L | E | N | M | F |
Query Conservation |   |
|   |   |   |
|
|   |   |
|   |   |
|   |   |
|   |   |   |
| . |
|   |
|   |
|
|   |   |
|   |
|
|
|
|
|
|
|   |   |
|   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |
|   |   |
|
|
|   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |
|
|   |   |   |
|
Template Sequence |   |
V | S | K | L | P | E | R | E | K | L | V | I | Q | L | I | F | Y | E | E | L | P | A | K | E | V | A | K | I | L | E | T | S | V | S | R | V | S | Q | L | K | A | K | A | L | E | R | L |
Template Known Secondary structure |   |
 | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
182 | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|