Job Description P0A8S1 Confidence 20.55% Date Thu Jan 5 11:08:37 GMT 2012 Rank 380 Aligned Residues 196 % Identity 6% Template d1amfa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.75

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.									.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																			.							.	.	.	.	.	.	.	.
Query SS confidence																																																			.							.	.	.	.	.	.	.	.
Query Sequence		L	L	L	S	L	A	V	N	A	D	S	L	A	T	W	L	L	P	A	L	A	P	V	L	A	D	S	P	I	R	L	N	L	Q	V	E	D	E	T	R	T	Q	E	R	L	R	R	G	E	.	V	V	G	A	V	S	.	.	.	.	.	.	.	.	I	Q	H	Q	A	L	P	S	C	L	V	D	K	L	G	A
Query Conservation																																																			.							.	.	.	.	.	.	.	.
Alig confidence																	.																																		.							.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		G	K	I	T	V	F	A	A	A	S	L	T	N	A	M	.	Q	D	I	A	T	Q	F	K	K	E	K	G	V	D	V	V	S	S	F	A	S	S	S	T	L	A	R	Q	I	E	A	G	A	P	A	D	L	F	I	S	A	D	Q	K	W	M	D	Y	A	V	D	K	K	A	I	D	T	A	T	R	Q	T	L	L
Template Known Secondary structure										G	G	G					.																																T				S					S	S										T	T		B		G	G	G
Template Predicted Secondary structure																	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.						.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.					.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																													.	.	.	.	.																									.	.	.	.
Query SS confidence																													.	.	.	.	.																									.	.	.	.
Query Sequence		L	D	Y	L	F	V	S	S	K	P	F	A	E	K	Y	F	P	N	G	V	T	R	S	A	L	L	K	.	.	.	.	.	A	P	V	V	A	F	D	H	L	D	D	M	H	Q	A	F	L	Q	Q	N	F	D	L	P	.	.	.	.	P	G	S	V	P	C	H	I	V	N	S	S	E	A	F	V	Q	L	A	R
Query Conservation																													.	.	.	.	.																									.	.	.	.
Alig confidence																													.	.	.	.	.																									.	.	.	.
Template Conservation
Template Sequence		G	N	S	L	V	V	V	A	P	K	A	S	V	Q	K	D	F	T	I	D	S	K	T	N	W	T	S	L	L	N	G	G	R	L	A	V	G	D	P	E	H	V	P	A	G	I	Y	A	K	E	A	L	Q	K	L	G	A	W	D	T	L	S	P	K	L	A	P	A	E	D	V	R	G	A	L	A	L	V	E	R
Template Known Secondary structure											T	T									S	T	T								T	T								T	T	T														T	T						G	G	G					S	S										T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	G	T	T	C	C	M	I	P	H	L	Q	I	E	K	E	L	A	S	G	E	L	I	D	L	T	P	G	L	F	Q	R	R	M	L	Y	W	H	R	F	A	P	E	S	R	M	M	R	K	V	T	D	A	L	L	D	Y	G
Query Conservation
Alig confidence																																															.	.	.
Template Conservation																																															.	.	.
Template Sequence		N	E	A	P	L	G	I	V	Y	G	S	D	A	V	A	S	K	G	V	K	V	V	A	T	F	P	E	D	S	H	K	K	V	E	Y	P	V	A	V	V	E	G	H	N	N	.	.	.	A	T	V	K	A	F	Y	D	Y	L
Template Known Secondary structure		T	S	S	S													S	S									G	G	G	S										B	T	T			S	.	.	.
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions