Job Description P0A8S1 Confidence 73.04% Date Thu Jan 5 11:08:37 GMT 2012 Rank 228 Aligned Residues 207 % Identity 12% Template c3ir1F_ PDB info PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis Resolution 2.15 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		L	L	L	S	L	A	V	N	A	D	S	L	A	T	W	L	L	P	A	L	A	P	V	L	A	D	S	P	I	R	L	N	L	Q	V	E	.	D	E	T	R	T	Q	E	R	L	R	R	G	E	V	V	G	A	V	S	I	Q	H	Q	A	L	P	S	C	L	V	D	K	L	G	A	L	D	Y	L	F	V	S	S
Query Conservation																																						.
Alig confidence																																						.
Template Conservation
Template Sequence		K	E	I	V	F	G	T	T	V	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	G	Y	T	V	K	L	V	E	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K	P	Y	L	D	D	F	K	K	E	H	N	L	D	I	T	E	V	F	Q	V	P
Template Known Secondary structure										S	S									T							T	T	T									S	S	S	S									T	S		S
Template Predicted Secondary structure
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.																					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	P	F	A	E	K	Y	F	P	N	G	V	T	R	S	A	L	L	K	A	P	V	V	A	F	D	H	L	D	D	M	H	Q	A	F	L	Q	Q	N	F	D	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	V	P	C	H	I	V	N	S	S	E	A	F	V	Q
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	P	L	G	L	Y	P	G	K	L	K	S	L	E	E	V	K	D	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D	I	A	E	N	L	K	N	I	K	I	V	E	L	E	A	A	Q	L	P	R
Template Known Secondary structure		B								S	S	S		S	T	T	S			T	T								S														T	T	S	S				T	T	S		G	G	G			G	G	G					T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		L	A	R	Q	G	T	T	C	C	M	I	P	H	L	Q	I	E	K	E	L	A	S	G	E	L	I	D	L	T	P	G	L	F	Q	R	R	M	L	Y	W	H	R	F	A	P	E	S	R	M	M	R	K	V	T	D	A	L	L	.	D	Y	G	H	K	V	L	R	Q	D
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		S	R	A	D	V	D	F	A	V	V	N	G	N	Y	A	I	S	S	G	M	K	L	T	E	A	L	F	Q	E	P	S	F	A	Y	V	N	W	S	A	V	K	T	A	D	K	D	S	Q	W	L	K	D	V	T	E	A	Y	N	S	D	A	F	K	A	Y	A	H	K	R
Template Known Secondary structure			G	G	G	S	S												T	T			G	G	G		S						S	T	T								G	G	G	T	T											T	S	S
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions