Job Description P0A8S1 Confidence 98.92% Date Thu Jan 5 11:08:37 GMT 2012 Rank 37 Aligned Residues 183 % Identity 13% Template c2qsxB_ PDB info PDB header:transcription Chain: B: PDB Molecule:putative transcriptional regulator, lysr family; PDBTitle: crystal structure of putative transcriptional regulator lysr from2 vibrio parahaemolyticus Resolution 1.64 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	L	A	V	N	A	D	S	L	A	T	W	L	L	P	A	L	A	P	V	L	A	D	S	P	I	R	L	N	L	Q	V	E	D	E	T	R	T	Q	E	R	L	R	R	G	E	V	V	G	A	V	S	I	Q	H	Q	A	L	P	S	C	L	V	D	K	L	G	A	L	D	Y	L	F	V	S	S	K	P	F
Query Conservation
Alig confidence																																						.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.
Template Sequence		L	V	V	D	V	T	P	S	F	A	S	L	W	L	V	P	N	I	N	D	F	H	Q	R	H	P	N	I	R	V	K	I	L	T	G	D	.	.	.	.	.	.	G	A	V	G	E	S	D	L	H	V	R	C	L	P	L	S	T	H	Y	E	Y	S	Q	L	L	C	E	E	T	L	L	L	I	G	N	T	N	L
Template Known Secondary structure														T													T	T										.	.	.	.	.	.	S						S								S		S			T	T															T	T	S
Template Predicted Secondary structure																																						.	.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.							.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	K	Y	F	P	N	G	V	T	R	S	A	L	L	K	A	P	V	V	A	F	D	H	L	D	D	M	H	Q	A	F	L	Q	Q	N	F	D	L	P	P	G	S	V	P	C	H	I	V	N	S	S	E	A	F	V	Q	L	A	R	Q	G	T	T	C	C	M	I	P	H	L	Q	I	E	K	E	L	A	S	G
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		P	.	.	.	.	.	.	.	.	K	N	Q	A	I	S	H	Y	P	F	I	P	Q	T	T	.	.	.	.	R	P	Q	L	W	E	Q	F	K	Q	E	N	D	I	T	Y	H	S	V	G	F	E	H	F	Y	L	A	C	E	A	V	R	X	E	K	G	L	A	L	L	P	D	F	X	A	Q	F	S	I	L	R	G
Template Known Secondary structure			.	.	.	.	.	.	.	.				G	G	G	G	S		B			B	T	T	.	.	.	.		T														B		S			B	S	S										T	T			B														T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		96									.	.	.	100	.	.	.	.	.	.	.	.	.	110	.					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	I	D	L	T	P	G	L	F	Q	R	R	M	L	Y	W	H	R	F	A	P	E	S	R	M	M	R	K	V	T	D	A	L	L	D	Y	G	H	K	V	L
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		D	I	Q	H	I	G	N	L	K	L	H	S	G	Y	G	Y	Y	.	V	V	I	P	N	F	R	L	T	S	R	K	V	A	L	F	H	D	W	L	K	D	K	L
Template Known Secondary structure		S																	.					G	G	G	T	T
Template Predicted Secondary structure																			.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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