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Job DescriptionP69853
Confidence2.67%DateThu Jan 5 12:12:13 GMT 2012
Rank79Aligned Residues119
% Identity19%Templatec1v0dA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:dna fragmentation factor 40 kda subunit; PDBTitle: crystal structure of caspase-activated dnase (cad)
Resolution2.6 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11........20.........30.........40.........50.........60.........70.........80.........90
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Query Sequence  SVAARVLGALFYYAPESAEAAPLVAVLTSDGWETQWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSV
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Template Sequence  SDITRFLSVF. . NEPHAGVIQAARQQLSDE. . . . QAPLRQKLLADLLHHVSQNITAETREQDPSWFEGL. . . . . . . . ESR
Template Known Secondary structure  TTT..TS
SSTTS
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BTTT
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   86...90..... ....100.........110... ......120.........130.........140........ .150.
 
   91........100.........110.........120.........130.........140...
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Query Sequence  WLDRESVLFGDSTLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGR
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Template Sequence  FRNKSGYLRYSCESRIRGYLREVSAYTSMVDEAAQEEYLRVLGSMCQKLKSVQ
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BTTGGGS
TTTTG
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   152.......160.........170.........180.........190.........200....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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