Job Description P0A959 Confidence 99.90% Date Thu Jan 5 11:09:27 GMT 2012 Rank 168 Aligned Residues 330 % Identity 12% Template d2fnua1 SCOP info PLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like Resolution 1.50

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	.
Query Conservation																																																																																	.
Alig confidence									.	.	.	.	.																		.																				.	.	.	.	.	.	.	.																							.
Template Conservation									.	.	.	.	.																		.																				.	.	.	.	.	.	.	.
Template Sequence		E	F	A	Y	S	E	P	.	.	.	.	.	C	L	D	K	E	D	K	K	A	V	L	E	V	L	N	S	K	.	Q	L	T	Q	G	K	R	S	L	L	F	E	E	A	L	C	E	F	L	.	.	.	.	.	.	.	.	G	V	K	H	A	L	V	F	N	S	A	T	S	A	L	L	T	L	Y	R	N	F	S
Template Known Secondary structure					S				.	.	.	.	.															T	S	S	.			S	S	S															.	.	.	.	.	.	.	.	T		S						S													S	S
Template Predicted Secondary structure									.	.	.	.	.																		.																				.	.	.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.						10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.									.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
				116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I
Query Conservation		.	.
Alig confidence		.	.																																									.	.	.	.	.																														.	.	.
Template Conservation																																												.	.	.	.	.																														.	.	.
Template Sequence		E	F	S	A	D	R	N	E	I	I	T	T	P	I	S	F	V	A	T	A	N	M	L	L	E	S	G	Y	T	P	V	F	A	G	I	K	N	D	G	N	I	D	.	.	.	.	.	E	L	A	L	E	K	L	I	N	E	R	T	K	A	I	V	S	V	D	Y	A	G	K	S	V	E	V	E	S	.	.	.	V
Template Known Secondary structure					T	T	S							S	S	S		T									T	T								B		T	T	S	S	B		.	.	.	.	.	G	G	G	S	G	G	G			T	T									G	G	G								.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.																														.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110						.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	.
Query Conservation																																																																																	.
Alig confidence																													.	.	.	.	.	.																																															.
Template Conservation																													.	.	.	.	.	.
Template Sequence		Q	K	L	C	K	K	H	S	L	S	F	L	S	D	S	S	H	A	L	G	S	E	Y	Q	N	K	K	.	.	.	.	.	.	V	G	G	F	A	L	A	S	V	F	S	F	H	A	I	K	P	I	T	T	A	E	G	G	A	V	V	T	N	D	S	E	L	H	E	K	M	K	L	F	R	S	H	G	M	L	K
Template Known Secondary structure									T								T	T		T	T				T	T			.	.	.	.	.	.	T	T	S	S	S	S								T	T	S	S	S			S	S							S												T	B	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.							.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
										273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.								.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	G	A	.	.	.	.	.	.	.	L	Y	M	F	P	K
Query Conservation		.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																.	.	.																										.	.	.	.	.	.	.
Template Conservation																																									.	.	.
Template Sequence		K	D	F	F	E	G	E	V	K	S	I	G	H	N	F	R	L	N	E	I	Q	S	A	L	G	L	S	Q	L	K	K	A	P	F	L	M	Q	K	R	.	.	.	E	E	A	A	L	T	Y	D	R	I	F	K	D	N	P	Y	F	T	P	L	H	P	L	L	K	D	K	S	S	N	H	L	Y	P	I	L	M	H
Template Known Secondary structure		S	S	S	S					S	S				B																T	T									.	.	.												T	T		S	S				S	G	G	G		S	S					S
Template Predicted Secondary structure																																									.	.	.
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.																				.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query Sequence		I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	P	D	H	F	R	I	V	T	L	.	.	P	R	V	D	D	I	E	L	S	L	S	K	F	A
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Alig confidence							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation							.	.	.	.	.
Template Sequence		Q	K	F	F	T	.	.	.	.	.	C	K	K	L	I	L	E	S	L	H	K	R	G	I	L	A	Q	V	H	Y	K	P	I	Y	Q	Y	Q	L	Y	Q	Q	L	F	N	T	A	P	L	K	S	A	E	D	F	Y	H	A	E	I	S	L	P	C	H	A	N	L	N	L	E	S	V	Q	N	I	A	H	S	V	L
Template Known Secondary structure		G	G	G	G	G	.	.	.	.	.	G											T	T				B						G	G	G	S																													T	T
Template Predicted Secondary structure							.	.	.	.	.
Template SS confidence
		292	.	.	.	.						.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		397	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	L	S	G	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	F	E	S	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions