Phyre 2 alignment of P0A959 with d2bkwa1

Job Description P0A959
Confidence 99.91% Date Thu Jan 5 11:09:27 GMT 2012

Rank 151 Aligned Residues 339

% Identity 11% Template d2bkwa1

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 2.57

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	.	.	.	N	S	G	D
Query Conservation																																																																										.	.	.
Alig confidence																																														.	.																											.	.	.
Template Conservation																																														.	.
Template Sequence	I	P	G	P	I	I	L	S	G	A	V	Q	K	A	L	D	V	P	S	L	G	H	T	S	P	E	F	V	S	I	F	Q	R	V	L	K	N	T	R	A	V	F	K	S	A	.	.	A	A	S	K	S	Q	P	F	V	L	A	G	S	G	T	L	G	W	D	I	F	A	S	N	F	I	L	S	K	A	P	N	K
Template Known Secondary structure	S	S	S	S										T	T	S						T	T	S																		T	T			.	.	G	G	G	T								S		T	T											S		T	T		S
Template Predicted Secondary structure																																														.	.
Template SS confidence
	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.			.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.

	121	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence	E	M	L	V	P	A	P	D	Y	P	L	.	.	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R
Query Conservation												.	.
Alig confidence												.	.																						.
Template Conservation																																			.
Template Sequence	N	V	L	V	V	S	T	G	T	F	S	D	R	F	A	D	C	L	R	S	Y	G	A	Q	V	D	V	V	R	P	L	K	I	G	.	E	S	V	P	L	E	L	I	T	E	K	L	S	Q	N	S	Y	G	A	V	T	V	T	H	V	D	T	S	T	A	V	L	S	D	L	K	A	I	S	Q	A	I	K	Q	T
Template Known Secondary structure							S	S													T	T									S	S	T	T	.	S														S			S						S			T	T	T	T
Template Predicted Secondary structure																																			.
Template SS confidence
	88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

	199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	.	.	.	.	.
Query Conservation																																																																												.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.																								.	.																										.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.																								.	.
Template Sequence	S	P	E	T	F	F	V	V	D	A	V	C	S	I	G	C	E	E	.	.	.	.	.	.	.	F	E	F	D	E	W	G	V	D	F	A	L	T	A	S	Q	A	I	G	A	P	A	G	.	.	L	S	I	S	L	C	S	S	R	F	X	D	Y	A	L	N	D	S	K	N	G	H	V	H	G	Y	F	S	S	L
Template Known Secondary structure		T	T	S							T	T	T	T	T	T	S		.	.	.	.	.	.	.			T	T	T	T	T		S													S		.	.															T									S		S	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.																								.	.
Template SS confidence
	167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.								.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.			.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

																	274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.						.	330	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	.	.	.	.	.	R	G	A	L
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.																																.	.	.	.	.
Template Conservation																																								.
Template Sequence	R	R	W	T	P	I	X	E	N	Y	E	A	G	K	G	A	Y	F	A	T	P	P	V	Q	L	I	N	S	L	D	V	A	L	K	E	I	L	E	E	.	G	L	H	K	R	W	D	L	H	R	E	X	S	D	W	F	K	D	S	L	V	N	G	L	Q	L	T	S	V	S	R	Y	P	S	N	X	S	A	H	G
Template Known Secondary structure												T	T					S	S																					.																						T	T	T					S	S		S	S	S	T	T	B		S	S
Template Predicted Secondary structure																																								.
Template SS confidence
	239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

	333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380				.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																																																	.	.	.
Query SS confidence																																																	.	.	.
Query Sequence	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	.	.	.	T	L	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y	H	Q
Query Conservation																																																	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																					.													.	.	.
Template Conservation								.	.	.	.	.	.	.	.																					.
Template Sequence	L	T	A	V	Y	V	A	.	.	.	.	.	.	.	.	D	P	P	D	V	I	A	F	L	K	S	H	G	V	V	I	A	G	G	I	.	H	K	D	I	G	P	K	Y	I	R	I	G	H	X	G	V	T	A	C	N	K	N	L	P	Y	X	K	N	C	F	D	L	I	K	L	A	L	Q	R
Template Known Secondary structure							S	.	.	.	.	.	.	.	.												T	T				B				.		T	T	T	G	G	G								G	G	G	T	S	S	T	T		T													T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.																					.
Template SS confidence
	318	.	320	.	.	.	.									.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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