Return to main results Retrieve Phyre Job Id

Job DescriptionP0A959
Confidence99.78%DateThu Jan 5 11:09:27 GMT 2012
Rank217Aligned Residues364
% Identity12%Templated1rv3a_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.........60....... ..70.........80.........90.
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Query Sequence  PVLKEAKRLEEEGNKVLKLNIGNPAPFGFDAPDEILVDVIRNLPTAQG. . . . . . . . YCDSKGLYSARKAIMQHYQARGMR
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Template Sequence  EVYDIIKKESNRQRVGLELIASEN. . . . . FASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGL
Template Known Secondary structure  SS

TT

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TSGGGT



TTSSS

TT
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   32.......40.........50..... ....60.........70.........80.........90.........100......
 
   92.......100.. .......110.........120.........130.........140 .........150.........160
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Query Sequence  DVTVEDIYIGN. GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSS. . . . . . . . . . GKAVHYLCDESSDWFPDLDD
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Template Sequence  DPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPD. TGYIDYDR
Template Known Secondary structure 
TTT


SST
TT

GGGT

GGG

B
SS
B
SS
B
TT.T
SB
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   107..110.........120.........130.........140.........150.........160.........170....... ..180.....
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLLTITFNGLSK
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Template Sequence  LEENARLFHPKLIIAGTSCYSRNL. . . . DYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF. . . . EHCHVVTTTTHK
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S

SS

S

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TT

TTTTSS

GG....GT
SSSG
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   186...190.........200......... 210.........220.........230.........240..... ....250.......
 
   241........250.........260. ........270.........280.........290.........300.........310.......
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Query Sequence  TYRVAGFRQGWMVLNGPKKHA. . . KGYIEGLEMLASMRLCANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELI
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Template Sequence  TL. . RGCRAGMIFYRRGVRSEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAAL
Template Known Secondary structure  GG..


S

SB



B

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S

TS
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   258. 260.........270.........280.........290.........300.........310.........320.........330.....
 
   318.320.........330.........340.........350.........360.........370.. .......380. .......
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Query Sequence  NDIPGVSCVKPRGALYMFPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWP. . . WPDHFRIVT. . . . . . LPRVDDI
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Template Sequence  VELGYKIVTGGSDNHLILVDLRSKGT. . . . DGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDF
Template Known Secondary structure  TT
GGGS
SSSGGGGT
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TT


SS
S
TTS


TT

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   343......350.........360........ .370.........380.........390.........400.........410........
 
   389390.........400...
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Query Sequence  ELSLSKFARFLSGYH
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Template Sequence  QKVAHFIHRGIELTV
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   419420.........430...
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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