Phyre 2 alignment of P0A959 with d1m32a

Job Description P0A959
Confidence 99.93% Date Thu Jan 5 11:09:27 GMT 2012

Rank 136 Aligned Residues 342

% Identity 12% Template d1m32a_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 2.20

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M
Query Conservation
Alig confidence																																												.	.	.	.
Template Conservation																																												.	.	.	.
Template Sequence	L	T	P	G	P	L	T	T	S	R	T	V	K	E	A	X	L	F	D	S	C	T	W	D	D	D	Y	N	I	G	V	V	E	Q	I	R	Q	Q	L	T	A	L	A	.	.	.	.	T	A	S	E	G	Y	T	S	V	L	L	Q	G	S	G	S	Y	A	V	E	A	V	L	G	S	A	L	G	P	Q	D	K	V
Template Known Secondary structure		S	S	S	S										T	T						T	T	S					T	T	T													.	.	.	.		S	S	S	S								S													S			T	T
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.

	123	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence	L	V	P	A	P	D	Y	P	L	W	T	.	.	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H
Query Conservation												.	.
Alig confidence												.	.																																																									.	.	.
Template Conservation																																																																						.	.	.
Template Sequence	L	I	V	S	N	G	A	Y	G	A	R	X	V	E	X	A	G	L	X	G	I	A	H	H	A	Y	D	C	G	E	V	A	R	P	D	V	Q	A	I	D	A	I	L	N	A	D	P	T	I	S	H	I	A	X	V	H	S	E	T	T	T	G	X	L	N	P	I	D	E	.	.	.	V	G	A	L	A	H	R	Y
Template Known Secondary structure					S	S														T										T	T	S															T	T								S			T	T	T	T								.	.	.
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
	84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160

	201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230											.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.
Query Sequence	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	.	.	.	.	.	.	.	.	.	.	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M
Query Conservation																															.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Conservation																																																																														.	.	.
Template Sequence	G	K	T	Y	I	V	D	A	X	S	S	F	G	G	I	P	X	D	I	A	A	L	H	I	D	Y	L	I	S	S	A	N	K	C	I	Q	G	V	P	G	F	A	F	V	I	A	R	E	Q	K	L	A	A	C	K	G	H	S	R	S	L	S	L	D	L	Y	A	Q	W	R	C	X	E	D	N	H	G	.	.	.
Template Known Secondary structure	T								T	T	T	T	T	T	S				T	T	T	T	T		S						S	S	S	T	T				S	S												T	T		T	T			S		S	T	T												T	T	T	.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

	271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K
Query Conservation
Alig confidence	.	.																					.
Template Conservation	.	.																					.
Template Sequence	.	.	K	W	R	F	T	S	P	T	H	T	V	L	A	F	A	Q	A	L	K	E	.	L	A	K	E	G	G	V	A	A	R	H	Q	R	Y	Q	Q	N	Q	R	S	L	V	A	G	X	R	A	L	G	F	N	T	L	L	D	D	E	L	H	S	P	I	I	T	A	F	Y	S	P	E	D	P	Q	Y	R	F	S
Template Known Secondary structure	.	.			S	S																	.					T																							T	T			B	S	S		G	G	G	B		S	S										T	T
Template Predicted Secondary structure	.	.																					.
Template SS confidence
			238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

	351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	.	.	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S
Query Conservation																																	.	.
Alig confidence																					.	.	.										.	.
Template Conservation																					.	.	.
Template Sequence	E	F	Y	R	R	L	K	E	Q	G	F	V	I	Y	P	G	K	V	S	Q	.	.	.	S	D	C	F	R	I	G	N	I	G	E	V	Y	A	A	D	I	T	A	L	L	T	A	I	R	T	A	X	Y
Template Known Secondary structure									T	T									S	S	.	.	.	S									S	S																		T
Template Predicted Secondary structure																					.	.	.
Template SS confidence
	315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.				.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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