Phyre 2 alignment of P0A959 with d1c7na

Job Description P0A959
Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012

Rank 33 Aligned Residues 369

% Identity 17% Template d1c7na_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 1.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	E	A	K	R	L	E	E	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N
Query Conservation
Alig confidence																						.	.	.																					.
Template Conservation																						.	.	.																					.
Template Sequence	L	M	Y	S	Q	N	P	E	V	G	N	E	V	V	P	L	S	V	A	D	M	.	.	.	E	F	K	N	P	P	E	L	I	E	G	L	K	K	Y	L	D	E	T	V	.	L	G	Y	T	G	P	T	E	E	Y	K	K	T	V	K	K	W	M	K	D	R	H	Q	W	D	I	Q	T	D	W	I	I	N	T	A
Template Known Secondary structure							T	T			T	T						S	S	S		.	.	.	S	S																			.		S	S																									G	G	G					S
Template Predicted Secondary structure																						.	.	.																					.
Template SS confidence
	21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.

	103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																																				.														.
Query SS confidence																																																				.														.
Query Sequence	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	.	W	F	P	D	L	D	D	I	R	A	K	I	T	.	P	R	T	R	G	I	V	I	I	N	P	N	N	P
Query Conservation																																																				.														.
Alig confidence																																																				.														.
Template Conservation
Template Sequence	G	V	V	P	A	V	F	N	A	V	R	E	F	T	K	P	G	D	G	V	I	I	I	T	P	V	Y	Y	P	F	F	M	A	I	K	N	Q	E	R	K	I	I	E	C	E	L	L	E	K	D	G	Y	Y	T	I	D	F	Q	K	L	E	K	L	S	K	D	K	N	N	K	A	L	L	F	C	S	P	H	N	P
Template Known Secondary structure	S															T	T							S	S			T								T	T	T												T	T														T		T	T								S	S	B	T	T
Template Predicted Secondary structure
Template SS confidence
	97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.

	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.
Query SS confidence																																																		.	.
Query Sequence	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	.	.	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K
Query Conservation																																																		.	.
Alig confidence																																																		.	.
Template Conservation
Template Sequence	V	G	R	V	W	K	K	D	E	L	Q	K	I	K	D	I	V	L	K	S	D	L	M	L	W	S	D	E	I	H	F	D	L	I	M	P	G	Y	E	H	T	V	F	Q	S	I	D	E	Q	L	A	D	K	T	I	T	F	T	A	P	S	K	T	F	N	I	A	G	M	G	M	S	N	I	I	I	K	N	P	D
Template Known Secondary structure	T	T	B																	S	S								T	T	T	T		B		T	T						G	G	G	S						T	T							S					T		G	G	G
Template Predicted Secondary structure
Template SS confidence
	177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.

	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320		.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	.	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K
Query Conservation																																																															.
Alig confidence										.	.	.	.	.																																																	.
Template Conservation										.	.	.	.	.
Template Sequence	I	R	E	R	F	T	K	S	R	.	.	.	.	.	D	A	T	S	G	M	P	F	T	T	L	G	Y	K	A	C	E	I	C	Y	K	E	C	G	K	W	L	D	G	C	I	K	V	I	D	K	N	Q	R	I	V	K	D	F	F	E	V	N	H	P	E	I	K	A	P	L	I	E	G	T	Y	L	Q	W	I	D
Template Known Secondary structure										.	.	.	.	.			T	T																																														T	T	S	B					S	B	S	S
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
	257	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.

	338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y	H
Query Conservation
Alig confidence							.	.	.
Template Conservation							.	.	.
Template Sequence	F	R	A	L	K	M	.	.	.	D	H	K	A	M	E	E	F	M	I	H	K	A	Q	I	F	F	D	E	G	Y	I	F	G	D	G	G	I	G	F	E	R	I	N	L	A	A	P	S	S	V	I	Q	E	S	L	E	R	L	N	K	A	L	K	D	L	K
Template Known Secondary structure		G	G	G			.	.	.												T	T							G	G	G	G		G	G	G	T	T								S
Template Predicted Secondary structure							.	.	.
Template SS confidence
	332	.	.	.	.	.				.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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