Return to main results Retrieve Phyre Job Id

Job DescriptionP0A959
Confidence99.95%DateThu Jan 5 11:09:27 GMT 2012
Rank112Aligned Residues334
% Identity14%Templated1b9ha_
SCOP infoPLP-dependent transferase-like PLP-dependent transferases GABA-aminotransferase-like
Resolution2.00

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.. .......60..... ....70.........80.........90.........100.........110..... ....120
Predicted Secondary structure 




.....
















.




Query SS confidence 





. . . .












.

















































.




Query Sequence  GFDAPD. . . . EILVDVIRNLPTA. QGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIVQAMQAL. LNSGD
Query Conservation        ....    
    
   .  
    
   





            
  
  
 
 
  
      
.   

Alig confidence 





....












.



















........





















.




Template Conservation    
  
        

 
 
               

  

   ........
    
   


 

  

  
    

Template Sequence  EFPAWPQYDDAERNGLVRALEQGQWWRMGGDEVNSFEREFAAHH. . . . . . . . GAAHALAVTNGTHALELALQVMGVGPGT
Template Known Secondary structure 



SS


TS

BTTT
ST........T
SS
TT

TT
Template Predicted Secondary structure 

















........











Template SS confidence 















































































   8.10.........20.........30.........40.........50. ........60.........70.........
 
   121........130.........140.........150.........160.........170.........180.........190.........200
Predicted Secondary structure 


































Query SS confidence 















































































Query Sequence  EMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQH
Query Conservation   


  
 
          
                                      



          
   
   
Alig confidence 































.

















...














...







Template Conservation   

       
        
            .                  ...       
    
  ...
  

   
Template Sequence  EVIVPAFTFISSSQAAQRLGAVTVPVDVDAAT. YNLDPEAVAAAVTPRTKV. . . IMPVHMAGLMADMDA. . . LAKISADT
Template Known Secondary structure  SSS
TTT

B
TTT.

B


TT...

B
GGG



...
Template Predicted Secondary structure 













.









...










...
Template SS confidence 















































































   80.........90.........100.........110. ........120......... 130.........140.... .....150..
 
   201........210.........220.........230.........240.........250.........260.........270...
Predicted Secondary structure 





































.......
Query SS confidence 








































































. . . . . . .
Query Sequence  NLIIFADEIYDKILYDDAEHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLAS. . . . . . .
Query Conservation     

 



                             
         
                       .......
Alig confidence 



















......














































.......
Template Conservation     

 
 
 
 
       ......          
 
  
 
    

 
      
                     
Template Sequence  GVPLLQDAAHAHGARWQGKR. . . . . . VGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRY
Template Known Secondary structure  T

B

TT
TT
TT......GGGSSS


TTSSS
SSS

TT
TBTT

TT
SS
Template Predicted Secondary structure 















......




























Template SS confidence 















































































   153......160.........170.. .......180.........190.........200.........210.........220......
 
   274.....280.........290.........300.........310.........320.........330.........340.........350
Predicted Secondary structure  ...

























Query SS confidence  . . .












































































Query Sequence  . . . MRLCANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYMFPKIDAKRFNIHDDQK
Query Conservation  ...           
    
                                     
  
 
    
            
Alig confidence  ...












































































Template Conservation                  
     
                    
                                    
Template Sequence  FHKIAGSNMRLNEFSASVLRAQLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRN
Template Known Secondary structure 


S


B
B
BTTTSTT




TT

B


S
TT

Template Predicted Secondary structure 

































Template SS confidence 















































































   227..230.........240.........250.........260.........270.........280.........290.........300......
 
   351........360.........370.. .......380.. .......390.........400
Predicted Secondary structure 





...........................



...

Query SS confidence 





















. . . . . . . . . . . . . . . . . . . . . . . . . . .









. . .

















Query Sequence  MVLDFLLQEKVLLVQGTAFNWP. . . . . . . . . . . . . . . . . . . . . . . . . . . WPDHFRIVTL. . . PRVDDIELSLSKFARFLS
Query Conservation       
   

 
 

  
   ...........................    



  ...   
 
  

 

   
 
Alig confidence 





















...........................









...

















Template Conservation   
   
   

 
  
                             
       
 
        
 

    


   
 
Template Sequence  ALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIADAVA
Template Known Secondary structure  TT





GGGSSS

SS
T
GGGGGS
Template Predicted Secondary structure 






























Template SS confidence 















































































   307..310.........320.........330.........340.........350.........360.........370.........380......
 
   401
Predicted Secondary structure 
Query SS confidence 
Query Sequence  G
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  R
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   387
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions