Job Description P0A959 Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012 Rank 50 Aligned Residues 362 % Identity 15% Template c3t18D_ PDB info PDB header:transferase Chain: D: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548. Resolution 2.86 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure														.	.											.	.	.	.	.																									.
Query SS confidence														.	.											.	.	.	.	.																									.
Query Sequence		P	V	L	K	E	A	K	R	L	E	E	E	.	.	G	N	K	V	L	K	L	N	I	G	.	.	.	.	.	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	.	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R
Query Conservation														.	.											.	.	.	.	.																									.
Alig confidence														.	.											.	.	.	.	.			.	.	.																				.
Template Conservation																																	.	.	.
Template Sequence		D	I	N	N	K	A	N	A	A	I	E	K	Y	G	R	E	A	V	I	N	A	A	L	G	T	L	L	D	D	K	G	.	.	.	K	I	I	A	L	P	S	V	Y	D	R	L	D	E	X	D	R	S	H	I	A	S	Y	A	P	I	E	G	E	K	D	Y	R	K	I	V	I	D	T	L	F	G	P	Y	K	P
Template Known Secondary structure																G	G	G						S				B		T	T	S	.	.	.		B												T	S		G	G	G	T	S	S				T	T															G	G	G
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence			.																																																								.																			.	.	.	.
Template Conservation			.																																																								.
Template Sequence		E	.	G	Y	I	S	A	I	A	T	P	G	G	T	G	A	I	R	S	A	I	F	S	Y	L	D	E	G	D	P	L	I	C	H	D	Y	Y	W	A	P	Y	R	K	I	C	E	E	F	G	R	N	F	K	T	F	E	F	.	F	T	D	D	F	A	F	N	I	D	V	Y	K	E	A	I	D	E	G	I	R	D
Template Known Secondary structure		S	.	S								S													T	S		S	S							S	S			T										T									.	B		S	S	S	S	B															S
Template Predicted Secondary structure			.																																																								.
Template SS confidence
		96		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
				168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.					.	.	.	.
Predicted Secondary structure		.	.																																	.	.	.	.	.	.																																	.	.	.	.
Query SS confidence		.	.																																	.	.	.	.	.	.																																	.	.	.	.
Query Sequence		.	.	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	.	.	.	.	.	.	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	.	.	.	.	T	I	T	F
Query Conservation		.	.																																	.	.	.	.	.	.																																	.	.	.	.
Alig confidence		.	.																																	.	.	.	.	.	.																																	.	.	.	.
Template Conservation
Template Sequence		S	D	R	I	A	S	L	I	N	S	P	G	N	N	P	T	G	Y	S	L	S	D	E	E	W	D	E	V	I	T	F	L	K	E	K	A	E	D	K	D	K	K	I	T	L	I	V	D	V	A	Y	L	E	F	A	G	D	G	D	Q	Q	R	K	F	F	E	K	F	S	N	L	P	R	N	L	F	V	V	V	A
Template Known Secondary structure			S									S	S		T	T	T														T	T	T	T	T	T	T	T	S	T	T										T	T		T	T	S	S	S	S	S	S	S	S	T	T	T	G	G	G	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.			.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																						.	.																						.	.
Query SS confidence																																						.	.																						.	.
Query Sequence		N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	.	.	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	.	.	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N
Query Conservation																																						.	.																						.	.
Alig confidence																																						.	.																						.	.
Template Conservation
Template Sequence		F	S	X	S	K	S	H	T	A	Y	G	L	R	S	G	A	A	V	G	I	S	S	S	K	E	I	I	E	E	F	E	A	S	L	A	H	S	A	R	C	N	W	S	N	G	T	H	A	A	Q	N	I	L	I	E	L	E	R	A	E	N	K	K	I	Y	E	Q	E	L	V	D	L	R	N	X	L	K	S	R	A
Template Known Secondary structure									T		G	G	G										S																				T	S	S							T	T	T	S	S	T	T	S	G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.		.	.	.	.	.	.	390
Predicted Secondary structure																																																																										.
Query SS confidence																																																																										.
Query Sequence		R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	P	.	R	V	D	D	I	E	L
Query Conservation																																																																										.
Alig confidence																														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.										.
Template Conservation																														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template Sequence		D	V	F	V	T	A	A	K	E	N	K	L	T	X	I	P	Y	F	G	G	F	F	T	F	I	P	T	D	.	.	.	.	.	.	.	.	K	A	F	D	I	V	K	D	L	E	K	E	N	I	F	T	I	P	S	A	.	.	.	.	.	.	.	K	G	I	R	V	A	I	C	G	V	G	E	E	K	I	P	K
Template Known Secondary structure												T								S	S	S							S	.	.	.	.	.	.	.	.											T	T	T							S	.	.	.	.	.	.	.	S						S	T	T	S		T	T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.									.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.								.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		391	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	S	K	F	A	R	F	L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	Q	R	L	A	F	Y	T	N	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions