Phyre 2 alignment of P0A959 with c3pj0D

Job Description P0A959
Confidence 99.94% Date Thu Jan 5 11:09:27 GMT 2012

Rank 124 Aligned Residues 333

% Identity 10% Template c3pj0D_

PDB info PDB header:lyase Chain: D: PDB Molecule:lmo0305 protein; PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	44	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.
Predicted Secondary structure									.																	.	.																																																		.	.
Query SS confidence									.																	.	.																																																		.	.
Query Sequence	A	P	F	G	F	D	A	P	.	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	.	.	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	.	.	N	S
Query Conservation									.																	.	.																																																		.	.
Alig confidence									.																	.	.																									.	.	.	.																						.	.
Template Conservation																																																				.	.	.	.
Template Sequence	T	P	Y	K	L	G	G	N	G	P	R	N	V	G	V	L	T	E	A	L	Q	N	I	D	D	N	L	E	S	D	I	Y	G	N	G	A	V	I	E	D	F	E	T	K	I	A	K	I	L	G	K	.	.	.	.	Q	S	A	V	F	F	P	S	G	T	X	A	Q	Q	I	A	L	R	I	W	A	D	R	K	E
Template Known Secondary structure		S			S	S	B	S	S			S								T	T	T	S		T	T					B	T	T	B	S															T		.	.	.	.	S						S																		T
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
	12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.

	119	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure															.	.	.
Query SS confidence															.	.	.
Query Sequence	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	.	.	.	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E
Query Conservation															.	.	.
Alig confidence															.	.	.																.	.	.
Template Conservation																																	.	.	.
Template Sequence	N	R	R	V	A	Y	H	P	L	S	H	L	E	I	H	E	Q	D	G	L	K	E	L	Q	Q	I	T	P	L	L	L	G	.	.	.	T	A	N	Q	L	L	T	I	D	D	I	K	S	L	R	E	P	V	S	S	V	L	I	E	L	P	Q	R	E	I	G	G	Q	L	P	A	F	E	E	L	E	K	I	S	E
Template Known Secondary structure								T	T						S	S	T	T														S	.	.	.		T	T	S									T		S	S			S						S	S	B	G	G	G	T	S	B
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
	88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.

	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R
Query Conservation
Alig confidence																											.	.	.	.																.
Template Conservation																											.	.	.	.																.
Template Sequence	Y	C	H	E	Q	G	I	S	L	H	L	D	G	A	R	L	W	E	I	T	P	F	Y	Q	K	S	.	.	.	.	A	E	E	I	C	A	L	F	D	S	V	Y	V	S	F	.	Y	G	I	G	G	I	A	G	A	I	L	A	G	N	D	D	F	V	Q	E	A	K	I	W	K	R	R	Y	G	G	D	L	I	S
Template Known Secondary structure						T								T	T		G	G	G					T			.	.	.	.						T	T		S							.						S	S																					T	T				S
Template Predicted Secondary structure																											.	.	.	.																.
Template SS confidence
	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F
Query Conservation
Alig confidence			.	.	.	.	.	.																																																												.	.	.	.	.
Template Conservation			.	.	.	.	.	.																																																												.	.	.	.	.
Template Sequence	L	Y	.	.	.	.	.	.	P	Y	I	L	S	A	D	Y	Y	F	E	K	R	I	G	K	X	A	E	Y	F	E	A	A	K	G	L	A	E	R	F	N	S	C	S	G	V	K	T	V	P	E	V	P	V	S	N	X	F	H	V	Y	F	E	N	S	A	D	E	.	.	.	.	.	I	G	A	I	L	T	K	I
Template Known Secondary structure			.	.	.	.	.	.														G	G	G																	T	S	T	T					S	S	S		S	S	S							S	S					.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.																																																												.	.	.	.	.
Template SS confidence
	241	.							.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.						.	.	.	.	.	.	.	.

	356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.						.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	.	.	.	.	.	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.
Template Conservation
Template Sequence	Q	D	E	T	G	V	G	I	S	G	Y	L	Q	E	K	S	A	D	V	C	A	F	E	V	S	V	G	D	A	F	A	E	I	P	A	K	N	L	E	L	V	F	R	C	L	E	K	E	L
Template Known Secondary structure										S							T	T								B		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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