Return to main results Retrieve Phyre Job Id

Job DescriptionP0A959
Confidence99.91%DateThu Jan 5 11:09:27 GMT 2012
Rank159Aligned Residues357
% Identity11%Templatec3nuiA_
PDB info PDB header:transferaseChain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60..... ....70.........80.........90.........100.........
Predicted Secondary structure 

















.
















Query SS confidence 


































.











































Query Sequence  EGNKVLKLNIGNPAPFGFDAPDEILVDVIRNLPTA. QGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGNGVSELIV
Query Conservation      

 
  
 
             
    
   .  
    
   





            
  
  
 
 
  
 
Alig confidence 


































.






















..


















Template Conservation 

  


  
      

   
 
  
    
                   
   
   ..       
    


 
  
Template Sequence  NGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEV. . SPFDSGRVFYTNSGSEAND
Template Known Secondary structure  T

TTT
TT
S







BTTB

..SS
SS
SS
Template Predicted Secondary structure 























..





Template SS confidence 















































































   45....50.........60.........70.........80.........90.........100... ......110.........120..
 
   110..... ....120.........130.........140.. ...... .150.....
Predicted Secondary structure  .........











.........................






Query SS confidence 





. . . . . . . . .


























. . . . . . . . . . .





. . . . . . . . . . . . . .






Query Sequence  QAMQAL. . . . . . . . . LNSGDEMLVPAPDYPLWTAAVSLSSGK. . . . . . . . . . . AVHYLC. . . . . . . . . . . . . . DESSDWF
Query Conservation       
.........   

 


  
 
          
  ...........      ..............       
Alig confidence 





.........


























...........





..............






Template Conservation   

              
  

      

        
                                         
Template Sequence  TMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLA
Template Known Secondary structure  TT
TT

TT



SSS

GGGGGGT
S
TT





TT

Template Predicted Secondary structure 









































Template SS confidence 















































































   123......130.........140.........150.........160.........170.........180.........190.........200..
 
   156...160.........170.........180.. .......190.........200.........210.........220.........230...
Predicted Secondary structure 















..





























Query SS confidence 


























. .


















































Query Sequence  PDLDDIRAKITPRTRGIVIINPNNPTG. . AVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDAEHHSIAPLAPDLLTI
Query Conservation                         



..          
   
      

 



                       
Alig confidence 


























..





































....








Template Conservation    
            
 

 
 
    
        
  
  
    
  

 


  
 

 
   ....         
Template Sequence  RELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTW. . . . GCVTYDFTP
Template Known Secondary structure 
GGG
SSBSTTTSB


TTTT


TTTTTTTTSSSS....TT


Template Predicted Secondary structure 

































....




Template SS confidence 















































































   203......210.........220.........230.........240.........250.........260......... 270........
 
   234.....240.........250.........260.........270.........280 .........290.........300.........310..
Predicted Secondary structure 
















.


Query SS confidence 














































.































Query Sequence  TFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRLCANV. PAQHAIQTALGGYQSISEFITPGGRLYEQRNR
Query Conservation        
         
                              .    
    
                      
Alig confidence 














































.































Template Conservation 

    
 
  
    
                          
      
   
 
                    
  
Template Sequence  DAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEE
Template Known Secondary structure  S
GGGGTTSS


TS

TT





SS
Template Predicted Secondary structure 























Template SS confidence 















































































   279280.........290.........300.........310.........320.........330.........340.........350........
 
   313......320.........330.........340.... .....350.........360.........370......... 380....
Predicted Secondary structure 















......











..


Query SS confidence 































. . . . . .


































. .




Query Sequence  AWELINDIPGVSCVKPRGALYMFPKIDAKRFN. . . . . . IHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRI. . VTLPR
Query Conservation                 
  
 
    
      ......           
   

 
 

  
       


..
    
Alig confidence 
















.













......





















.......





..




Template Conservation   
        
  


 .
    
                         
   

     .......   

       
Template Sequence  RLKHIAERPNIGEYRGI. GFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL. . . . . . . GQSVVLCPPFILT
Template Known Secondary structure  TTSTT.TT
SBTTTTB


GGG
TT
.......TT


TT

Template Predicted Secondary structure 









.

















.......







Template SS confidence 















































































   359360.........370..... ....380.........390.........400.........410....... ..420.........430
 
   385....390.........400.
Predicted Secondary structure 
Query SS confidence 
















Query Sequence  VDDIELSLSKFARFLSG
Query Conservation   
 
  

 

   
  
Alig confidence 
















Template Conservation   
 
   
  
   
  
Template Sequence  EAQMDEMFDKLEKALDK
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
















   431........440.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions