Job Description P0A959 Confidence 99.96% Date Thu Jan 5 11:09:27 GMT 2012 Rank 98 Aligned Residues 381 % Identity 12% Template c3mc6C_ PDB info PDB header:lyase Chain: C: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of scdpl1 Resolution 3.15 Å

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		8	.	10	.	.	.	.	.	.	.	.						.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.						.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.																																																		.	.	.	.	.
Query SS confidence													.	.	.	.	.																																																		.	.	.	.	.
Query Sequence		S	K	L	E	N	V	C	Y	D	I	R	.	.	.	.	.	G	P	V	L	K	E	A	K	R	L	E	E	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	.	.	.	.	.	Y	C	D	S	K	G	L	Y	S	A
Query Conservation													.	.	.	.	.																																																		.	.	.	.	.
Alig confidence													.	.	.	.	.																	.																																	.	.	.	.	.
Template Conservation																																		.
Template Sequence		S	Q	L	M	N	F	P	Q	L	P	S	N	G	I	P	Q	D	D	V	I	E	E	L	N	K	L	N	D	L	I	P	H	.	T	Q	W	K	E	G	K	V	S	G	A	V	Y	H	G	G	D	D	L	I	H	L	Q	T	I	A	Y	E	K	Y	C	V	A	N	Q	L	H	P	D	V	F	P	A	V	R	K	M
Template Known Secondary structure								S	S			S	S																	S	S			.			G	G	G	T		B	S	S	S		S																	T	S	S		B	T	T		T	T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.									.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.
Query Sequence		R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	.	.	.	.	.	.	.	.	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D
Query Conservation																																										.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	S	E	V	V	S	M	V	L	R	M	F	N	A	P	S	D	T	G	C	G	T	T	T	S	G	G	T	E	S	L	L	L	A	C	L	S	A	K	M	Y	A	L	H	H	R	G	I	T	E	P	E	I	I	A	P	V	T	A	H	A	G	F	D	K	A	A	Y	Y	F	G	M	K	L	R	H	V	E	L	D
Template Known Secondary structure													T	T			T	T	T							S	S																				S			S	S							T	T	S											S									B
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.
Query SS confidence																																																																					.	.	.	.
Query Sequence		E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	.	.	.	.	D	A	E	H	H	S	I	A	P
Query Conservation																																																																					.	.	.	.
Alig confidence					.																																					.	.	.																									.	.	.	.
Template Conservation					.																																					.	.	.
Template Sequence		P	T	T	.	Y	Q	V	D	L	G	K	V	K	K	F	I	N	K	N	T	V	L	L	V	G	S	A	P	N	F	P	H	G	I	A	D	D	I	E	G	.	.	.	L	G	K	I	A	Q	K	Y	K	L	P	L	H	V	D	S	C	L	G	S	F	I	V	S	F	M	E	K	A	G	Y	K	N	L	P	L	L
Template Known Secondary structure		T	T	T	.		S	B		T	T	T	T	G	G	G			S	S								T	T		T	T	T					S		T	T	.	.	.	T	T	T					T	T							T	T	T	T					G	G	G	T	T	T	T			S
Template Predicted Secondary structure					.																																					.	.	.
Template SS confidence
		289	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure																																															.	.	.	.	.
Query SS confidence																																															.	.	.	.	.
Query Sequence		L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	.	.	.	.	.	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I
Query Conservation																																															.	.	.	.	.
Alig confidence																																															.	.	.	.	.
Template Conservation
Template Sequence		D	F	R	V	P	G	V	T	S	I	S	C	D	T	H	K	Y	G	F	A	P	K	G	S	S	V	I	M	Y	R	N	S	D	L	R	M	H	Q	Y	Y	V	N	P	A	W	T	G	G	L	Y	G	S	P	T	L	A	G	S	R	P	G	A	I	V	V	G	C	W	A	T	M	V	N	M	G	E	N	G	Y	I
Template Known Secondary structure		S	T	T	S	T	T								T	T	T	T	T				S	S							S	S					T	T	T	S			B	T	T		T	T	S		B			S	S	S		S	S		B
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	.	I	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I
Query Conservation																					.
Alig confidence																					.																							.	.	.	.	.	.																			.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.																			.	.	.	.	.
Template Sequence		E	S	C	Q	E	I	V	G	A	A	M	K	F	K	K	Y	I	Q	E	N	I	P	D	L	D	I	M	G	N	P	R	Y	S	V	I	S	F	S	S	K	T	L	.	.	.	.	.	.	N	I	H	E	L	S	D	R	L	S	K	K	G	W	H	F	N	A	.	.	.	.	.	L	Q	K	P	V	A	L	H	M
Template Known Secondary structure																					S		T	T					S				S	S							T	T	T	.	.	.	.	.	.	T										T	T	T		B				.	.	.	.	.			S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.																			.	.	.	.	.
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.							.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.						.	.	.	.	.	510	.	.	.
		380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		V	T	L	.	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y	H	Q
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		A	F	T	R	L	S	A	H	V	V	D	E	I	C	D	I	L	R	T	T	V	Q	E	L	K	S
Template Known Secondary structure					T	T	T	T		T																T
Template Predicted Secondary structure
Template SS confidence
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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