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Job DescriptionP0A959
Confidence99.95%DateThu Jan 5 11:09:27 GMT 2012
Rank115Aligned Residues341
% Identity13%Templatec3mafB_
PDB info PDB header:lyaseChain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form)
Resolution2.97 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70 .........80.........90........ .100.........110......
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Query Sequence  GFDAPDEILVDVIRNLPTAQGYCD. . . . . SKGLYSARKAIMQHYQARGMRDVTVEDI. . YIGNGVSELIVQAMQALL. . .
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Template Sequence  GAVYDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWA
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   102.......110.........120.........130.........140.........150.........160.........170.........180.
 
   117..120.........130.........140.........150.........160.........170.........180.........190.
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Query Sequence  . . . . . NSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDDIRAKITPRTRGIVIINPNNPTGAVYSKELLM
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Template Sequence  RATKGITAPEAVVPVSAHAAFDKAAQYFGIKLVRTPLDADY. . RADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPE. .
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   184.....190.........200.........210.........220.... .....230.........240.........250.........
 
   192.......200.........210...... ...220.........230.........240.........250.........260........
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Query Sequence  EIVEIARQHNLIIFADEIYDKILYD. . . DAEHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGL
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Template Sequence  . IAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAA
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   260.........270.........280.........290.........300.........310.........320.........330........
 
   269270.. .......280.........290.........300.........310.........320.........330.........340...
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Query Sequence  EMLA. . . . . SMRLCANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYMFPKIDAKRF
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Template Sequence  DWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIAV. . . . . . . A
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   339340.........350.........360.........370.........380.........390.........400.........410 .
 
   344.....350.........360.........370.........380.. .......390.........400....
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Query Sequence  NIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTL. . . PRVDDIELSLSKFARFLSGYHQ
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Template Sequence  SDELNIYQVMEEMAGRGWRLNG. . . . . LHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRA
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   412.......420.........430... ......440.........450.........460.........470
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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