Job Description P0A959 Confidence 99.87% Date Thu Jan 5 11:09:27 GMT 2012 Rank 190 Aligned Residues 332 % Identity 11% Template c3m5uA_ PDB info PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: crystal structure of phosphoserine aminotransferase from2 campylobacter jejuni Resolution 2.15 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.													.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	.	D	I	Y
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence											.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.						.
Template Conservation											.	.	.	.	.																																																				.	.	.	.	.	.
Template Sequence		X	R	K	I	N	F	S	A	G	.	.	.	.	.	P	S	T	L	P	L	E	I	L	E	Q	A	Q	K	E	L	C	D	Y	Q	G	R	G	Y	S	I	X	E	I	S	H	R	T	K	V	F	E	E	V	H	F	G	A	Q	E	K	A	K	K	L	Y	.	.	.	.	.	.	E	L	N	D	D	Y	E	V	L
Template Known Secondary structure									S	S	.	.	.	.	.	S														T	S	S	S	G	G	G	S	S	S		G	G	G	S		S	S	S																			.	.	.	.	.	.	T			T	T
Template Predicted Secondary structure											.	.	.	.	.																																																				.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.						10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.
Query SS confidence																																		.	.
Query Sequence		I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	.	.	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P
Query Conservation																																		.	.
Alig confidence																																		.	.																												.	.	.
Template Conservation																																																															.	.	.
Template Sequence		F	L	Q	G	G	A	S	L	Q	F	A	X	I	P	X	N	L	A	L	N	G	V	C	E	Y	A	N	T	G	V	W	T	K	K	A	I	K	E	A	Q	I	L	G	V	N	V	K	T	V	A	S	S	E	E	S	N	F	D	H	I	P	.	.	.	R	V	E	F	S	D	N	A	D	Y	A	Y	I	C	S	N
Template Known Secondary structure				S	S																S	S								S													T	T										T	T	T	T	S		S			.	.	.						T	T	S	S						S
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130				.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P
Query Conservation
Alig confidence												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																								.	.
Template Conservation												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																								.	.
Template Sequence		N	T	I	Y	G	T	Q	Y	Q	N	.	.	.	.	.	.	.	.	.	Y	P	K	T	K	T	P	L	I	V	D	A	S	S	D	F	F	S	.	.	.	.	.	.	.	.	.	R	K	V	D	F	S	N	I	A	L	F	Y	G	G	V	Q	K	N	A	G	I	S	G	.	.	L	S	C	I	F	I	R	K	D
Template Known Secondary structure			T	T	T	T				S	S	.	.	.	.	.	.	.	.	.					S	S							G	G	G	T	T	S	.	.	.	.	.	.	.	.	.	S					T	T								T	T	T	T	S	S		T	T	.	.
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.																								.	.
Template SS confidence
		147	.	.	150	.	.	.	.	.	.										.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.										.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.			.	.	200	.	.	.	.	.	.
		258	.	260	.	.	.	.									.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence		K	K	H	A	K	G	Y	.	.	.	.	.	.	.	.	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	L	E	R	S	K	N	K	Q	I	P	S	X	L	N	Y	L	T	H	A	E	N	Q	S	L	F	N	T	P	P	T	F	A	I	Y	X	F	N	L	E	X	D	W	L	L	N	Q	G	G	L	D	K	V	H	E	K	N	S	Q	K	A	T	X	L	Y	E	C	I	D	L	S	N	G	F	Y	K	G	H	A	D
Template Known Secondary structure								T					G	G	G								T	T	T		S	S																			T	T	T																						T	S	T	T	S				S	S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	.	.	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y
Query Conservation																																																							.	.
Alig confidence																																										.	.	.	.										.	.
Template Conservation																																										.	.	.	.
Template Sequence		K	K	D	R	S	L	X	N	V	S	F	N	I	A	K	N	K	D	L	E	P	L	F	V	K	E	A	E	E	A	G	X	I	G	L	K	G	H	R	I	.	.	.	.	L	G	G	I	R	A	S	I	Y	N	A	L	N	L	D	Q	V	K	T	L	C	E	F	X	K	E	F	Q	G	K	Y
Template Known Secondary structure		G	G	G	B		S	S							S	S		T	T												T	T					B			T	T	.	.	.	.	T		S							T	T	S
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.					.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions