Job Description P0A959 Confidence 99.94% Date Thu Jan 5 11:09:27 GMT 2012 Rank 125 Aligned Residues 343 % Identity 14% Template c3lvmB_ PDB info PDB header:transferase Chain: B: PDB Molecule:cysteine desulfurase; PDBTitle: crystal structure of e.coli iscs Resolution 2.05 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.													.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	.	.	.	.	.	.	.	.	.	.	.	.	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.
Template Conservation														.	.	.	.																																																		.	.	.	.	.	.
Template Sequence		K	L	P	I	Y	L	D	Y	S	A	T	T	.	.	.	.	P	V	D	P	R	V	A	E	K	M	M	Q	F	M	T	M	D	G	T	F	G	N	P	A	S	R	S	H	R	F	G	W	Q	A	E	E	A	V	D	I	A	R	N	Q	I	A	D	L	V	.	.	.	.	.	.	G	A	D	P	R	E	I	V	F
Template Known Secondary structure			S	S				B	T	T	T			.	.	.	.												T	T	T	S	T	T	S					T	T		T	T	S																						.	.	.	.	.	.	T			G	G	G
Template Predicted Secondary structure														.	.	.	.																																																		.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.					.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.		.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.																																.
Query SS confidence																		.	.	.	.																																.
Query Sequence		G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	.	.	.	.	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	.	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I
Query Conservation																		.	.	.	.																																.
Alig confidence																		.	.	.	.																																.
Template Conservation
Template Sequence		T	S	G	A	T	E	S	D	N	L	A	I	K	G	A	A	N	F	Y	Q	K	K	G	K	H	I	I	T	S	K	T	E	H	K	A	V	L	D	T	C	R	Q	L	E	R	E	G	F	E	V	T	Y	L	A	P	Q	R	N	G	I	I	D	L	K	E	L	E	A	A	M	R	D	D	T	I	L	V	S	I	M
Template Known Secondary structure			S	S																T	T	T	T								T	T	S														T	T										T	T	S													T	T
Template Predicted Secondary structure
Template SS confidence
		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N
Query Conservation
Alig confidence																.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.																							.	.	.	.	.	.	.	.	.
Template Sequence		H	V	N	N	E	I	G	V	V	Q	D	I	A	A	.	.	.	I	G	E	M	C	R	A	R	G	I	I	Y	H	V	D	A	T	Q	S	V	G	K	.	.	.	.	.	.	.	.	.	L	P	I	D	L	S	Q	L	K	V	D	L	M	S	F	S	G	H	K	I	Y	G	P	K	G	I	G	A	L	Y	V	R
Template Known Secondary structure		S	B		T	T	T		B	B						.	.	.									T								T	T	T	T	T	T	.	.	.	.	.	.	.	.	.	S				T	T	T	S			S						S	T	T	T	T	S		S	S
Template Predicted Secondary structure																.	.	.																							.	.	.	.	.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.										.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	G	.	.	.	A	L
Query Conservation																																																																													.	.	.
Alig confidence																																																																													.	.	.
Template Conservation
Template Sequence		R	K	P	R	V	R	I	E	A	Q	M	H	G	G	G	H	E	R	G	M	R	S	G	T	L	P	V	H	Q	I	V	G	M	G	E	A	Y	R	I	A	K	E	E	M	A	T	E	M	E	R	L	R	G	L	R	N	R	L	W	N	G	I	K	D	I	E	E	V	Y	L	N	G	D	L	E	H	G	A	P	N
Template Known Secondary structure		B	T	T	B						S	S		S	S		T	T	T	T	T			S																																								T	T	S	T	T					S		S	S	S	B		T	T
Template Predicted Secondary structure
Template SS confidence
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.													.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query Sequence		Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	.	.	.	.	.	.	.	.	.	.	.	.	W	P	D	H	F	R	I	V	T	L	.	.	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.											.	.
Alig confidence													.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation													.	.	.	.	.	.	.	.
Template Sequence		I	L	N	V	S	F	N	Y	V	E	G	.	.	.	.	.	.	.	.	E	S	L	I	M	A	L	K	D	L	A	V	S	S	G	S	A	L	E	P	S	Y	V	L	R	A	L	G	L	N	D	E	L	A	H	S	S	I	R	F	S	L	G	R	F	T	T	E	E	E	I	D	Y	T	I	E	L	V	R	K	S
Template Known Secondary structure								T	T	S			.	.	.	.	.	.	.	.							T	T	T				B														T	T								T								T	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310									.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.
		399	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	Y	H	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	R	L	R	D	L
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		377	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions