Job Description P0A959 Confidence 99.88% Date Thu Jan 5 11:09:27 GMT 2012 Rank 186 Aligned Residues 331 % Identity 9% Template c3ke3A_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative serine-pyruvate aminotransferase; PDBTitle: crystal structure of putative serine-pyruvate aminotransferase2 (yp_263484.1) from psychrobacter arcticum 273-4 at 2.20 a resolution Resolution 2.20 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template Sequence		D	P	N	G	L	L	E	Y	S	V	V	Y	T	D	R	A	L	N	H	X	S	K	A	F	Q	E	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	X	N	D	L	L	S	N	L	K	T	V	Y	N	.	.	.	.	.	.	.	A	E	A	A	V	I	I	P	G	S	G	T	Y	G	X	E	A
Template Known Secondary structure		S	T	T	S						S	S			T	T	S			T	T	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	.	.	.	.	.	.	.		S							S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.																	.	.	.	.	40	.	.	.	.	.	.	.	.								.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.											.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.																												.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	.	.	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	.	.	.	.	.	.	.	.	.	.	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N
Query Conservation																							.	.																												.	.	.	.	.	.	.	.	.	.
Alig confidence								.															.	.																												.	.	.	.	.	.	.	.	.	.
Template Conservation								.
Template Sequence		V	A	R	Q	L	T	.	I	D	E	D	C	L	I	I	R	N	G	W	F	S	Y	R	W	T	Q	I	L	E	K	G	K	F	A	K	S	S	T	V	L	T	A	E	R	T	E	D	T	E	A	P	K	P	F	A	P	V	D	I	E	T	A	V	A	K	I	K	E	D	K	S	A	I	V	Y	A	P	H	V	E
Template Known Secondary structure								.	T	T									S																S	S										S	S			S	S																				T		S						S
Template Predicted Secondary structure								.
Template SS confidence
		66	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.																								.	.
Template Conservation																																							.	.	.	.	.	.	.	.																								.	.
Template Sequence		T	S	S	G	I	I	L	S	E	E	Y	I	K	A	L	S	E	A	V	H	S	V	G	G	L	L	V	I	D	C	I	A	S	G	C	V	W	.	.	.	.	.	.	.	.	L	D	X	K	E	L	G	I	D	V	L	I	S	A	P	Q	G	W	S	S	T	P	C	.	.	A	G	L	V	X	L	S	A	A	A
Template Known Secondary structure		T	T	T	T																		T	T								T	T		T	T			.	.	.	.	.	.	.	.							T		S											S				.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.																								.	.
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.									.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.			.	.	.	.	.	210	.	.	.	.
		259	260	.	.	.	.	.																		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	H	A	K	G	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Conservation																																																				.	.
Template Sequence		I	K	K	V	E	S	T	E	S	N	C	F	S	L	D	L	K	Q	W	L	T	I	X	R	A	Y	E	N	G	G	H	A	Y	H	A	T	X	P	T	D	S	L	R	Q	F	R	D	A	I	L	.	.	E	A	K	E	I	G	F	D	I	L	R	D	A	Q	W	E	L	G	N	R	V	R	K	V	L	T	D	K
Template Known Secondary structure							T				S		S	T	T														T	T	S				S	S																.	.																												T
Template Predicted Secondary structure																																																				.	.
Template SS confidence
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.				370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.														.	.
Query SS confidence																																																		.	.	.														.	.
Query Sequence		G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	.	.	.	N	W	P	W	P	D	H	F	R	I	V	T	L	.	.	P	R	V	D	D	I	E	L	S	L	S	K	F	A
Query Conservation																																																		.	.	.														.	.
Alig confidence																							.	.	.	.																								.	.	.														.	.
Template Conservation																							.	.	.	.
Template Sequence		G	I	E	S	V	A	A	E	G	F	E	A	P	G	V	V	V	S	Y	T	E	.	.	.	.	R	D	D	X	H	K	G	S	A	F	A	E	A	G	L	Q	I	A	A	G	V	P	L	K	V	G	E	P	D	N	F	K	T	F	R	L	G	L	F	G	L	D	K	L	T	D	I	D	G	T	V	E	R	F	E
Template Known Secondary structure		T			B	S	B		T	T		B		S	S							S	.	.	.	.						S	S						T	T										S	S				T	T										S					T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.					.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		397	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	L	D	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		370	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions