Job Description P0A959 Confidence 99.73% Date Thu Jan 5 11:09:27 GMT 2012 Rank 222 Aligned Residues 368 % Identity 16% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.									.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.
Query Sequence		S	S	K	L	E	N	V	C	Y	D	I	R	G	P	V	L	K	E	A	K	R	L	E	E	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	.	.	.	.	.	.	.	.	Y	C	D	S	K	G	L	Y	S	A	R
Query Conservation																																																															.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.									.	.	.	.	.																				.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.									.	.	.	.	.
Template Sequence		S	A	P	L	A	E	V	D	P	D	I	A	E	L	L	A	K	E	L	G	R	Q	R	D	T	.	.	.	.	L	E	M	I	A	S	E	N	.	.	.	.	.	F	V	P	R	A	V	L	Q	A	Q	G	S	V	L	T	N	K	Y	A	E	G	L	P	G	R	R	Y	Y	G	G	C	E	H	V	D	V	V	E
Template Known Secondary structure		G																								S	.	.	.	.					T	T			.	.	.	.	.											T	S	G	G	G	G							T	T			S	S	S
Template Predicted Secondary structure																											.	.	.	.									.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.						.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.
Query Sequence		K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	.	.	.	.	.	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D
Query Conservation																																																							.	.	.	.	.
Alig confidence															.	.											.																												.	.	.	.	.
Template Conservation															.	.											.
Template Sequence		N	L	A	R	D	R	A	K	A	L	F	G	A	.	.	E	F	A	N	V	Q	P	H	S	G	.	A	Q	A	N	A	A	V	L	H	A	L	M	S	P	G	E	R	L	L	G	L	D	L	A	N	G	G	H	L	T	H	G	M	R	L	N	F	S	G	K	L	Y	E	N	G	F	Y	G	V	D	P	A	T	H
Template Known Secondary structure													T		.	.	S							S	S		.														T	T								G	G	G	T			G	G	G	T		T	T	S					S	S									T	T	T
Template Predicted Secondary structure															.	.											.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I
Query Conservation
Alig confidence			.																														.	.	.	.																																					.	.	.	.
Template Conservation			.																														.	.	.	.																																					.	.	.	.
Template Sequence		L	.	I	D	M	D	A	V	R	A	T	A	L	E	F	R	P	K	V	I	I	A	G	W	S	A	Y	P	R	V	L	.	.	.	.	D	F	A	A	F	R	S	I	A	D	E	V	G	A	K	L	L	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	S	P	V	.	.	.	.	P	H	A	D	V
Template Known Secondary structure		S	.																S							S	S			S			.	.	.	.													T								T	T	T						T	T	S	S			S	T	.	.	.	.	T	T		S
Template Predicted Secondary structure			.																														.	.	.	.																																					.	.	.	.
Template SS confidence
		150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.					180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.					.	.	.	.	220
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A
Query Conservation
Alig confidence									.	.	.																																	.
Template Conservation									.	.	.																																	.
Template Sequence		V	S	T	T	V	H	T	.	.	.	L	G	G	G	R	S	G	L	I	V	G	K	Q	Q	Y	A	K	A	I	N	S	A	V	F	P	G	Q	Q	G	G	P	L	.	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E	F	A	D	R	Q	R	R	T	L	S	G	A	R	I	I	A	D	R	L
Template Known Secondary structure									.	.	.					S								G	G	G									T	T	T	T		S	S			.															T	S
Template Predicted Secondary structure									.	.	.																																	.
Template SS confidence
		221	.	.	.	.	.	.				.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.					.	.	.	380							.	.
Predicted Secondary structure																		.																																																.	.	.	.					.	.	.	.	.	.
Query SS confidence																		.																																																.	.	.	.					.	.	.	.	.	.
Query Sequence		W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	.	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	.	.	.	.	F	R	I	V	.	.	.	.	.	.	T	L
Query Conservation																		.																																																.	.	.	.					.	.	.	.	.	.
Alig confidence																		.															.	.	.	.																														.	.	.	.					.	.	.	.	.	.
Template Conservation																																	.	.	.	.
Template Sequence		M	A	P	D	V	A	K	A	G	V	S	V	V	S	G	G	T	D	V	H	L	V	L	V	D	L	R	D	S	P	L	.	.	.	.	D	G	Q	A	A	E	D	L	L	H	E	V	G	I	T	V	N	R	N	A	V	P	N	D	P	R	P	P	M	V	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G
Template Known Secondary structure		S	S						T	T				G	G	G	S		S	S	S							T	T	S	S		.	.	.	.												T	T									T	T		S	S		T	T	T		S													T
Template Predicted Secondary structure																																	.	.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.					.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	D	T	E	F	T	E	V	A	D	I	I	A	T	A	L	A	T	G	S
Template Known Secondary structure																				S	G	G
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions