Job Description P0A959 Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012 Rank 45 Aligned Residues 362 % Identity 15% Template c3ez1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase mocr family; PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution Resolution 2.60 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.							.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		V	L	K	E	A	K	R	L	E	E	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	.	.	.	.	.	.	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T
Query Conservation																																												.	.	.	.	.	.
Alig confidence																.																												.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation																.																																																									.	.	.	.	.	.
Template Sequence		A	R	Q	A	Y	E	A	F	K	A	R	G	L	N	.	L	N	X	Q	R	G	Q	P	A	D	A	D	F	D	L	S	N	G	L	L	T	V	L	G	A	E	D	V	R	X	D	G	L	D	L	R	N	Y	P	G	G	V	A	G	L	P	S	A	R	A	L	F	A	G	Y	L	.	.	.	.	.	.	D	V	K
Template Known Secondary structure													T			.			S												T	T	G	G	G	G	G	S			G	G	G				T	T			T	T	S	S		S		T	T													T	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																.																																																									.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.														.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	E	N	V	L	V	W	N	N	S	S	L	E	L	Q	G	L	V	L	T	F	A	L	L	H	G	V	R	G	S	T	G	P	W	L	S	Q	T	P	K	X	I	V	T	V	P	G	Y	D	R	H	F	L	L	L	Q	T	L	G	F	E	L	L	T	V	D	X	Q	S	D	G	P	D	V	D	A	V	E	R	L
Template Known Secondary structure		G	G	G					S	S																T			T	T		S	S		G	G	G	G									S													T										T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.								.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																					.																												.	.	.	.	.	.	.
Query SS confidence																																					.																												.	.	.	.	.	.	.
Query Sequence		R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	.	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	.	.	.	.	.	.	.	A	P	L	A	P	D	L	L	T	I
Query Conservation																																					.																												.	.	.	.	.	.	.
Alig confidence																																					.																												.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	T	D	P	S	V	K	G	I	L	F	V	P	T	Y	S	N	P	G	G	E	T	I	S	L	E	K	A	R	R	L	A	G	L	Q	A	A	A	P	D	F	T	I	F	A	D	D	A	Y	R	V	H	H	L	V	E	E	D	R	A	E	P	V	N	F	V	V	L	A	R	D	A	G	Y	P	D	R	A	F
Template Known Secondary structure				S		T	T								S	S	S		T	T	T														T				S	S	T	T								T	T	S	S		B			S	S	S															T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.			.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	.	.	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N
Query Conservation																																																													.	.
Alig confidence												.																								.	.	.	.	.																					.	.
Template Conservation												.																								.	.	.	.	.
Template Sequence		V	F	A	S	T	S	K	I	T	F	.	A	G	A	G	L	G	F	V	A	S	S	E	D	N	I	R	W	L	S	K	Y	L	G	.	.	.	.	.	A	Q	S	I	G	P	N	K	V	E	Q	A	R	H	V	K	F	L	T	E	Y	P	G	G	L	E	G	L	X	R	D	H	A	A	I	I	A	P	K	F	R
Template Known Secondary structure						S	T	T	T	S		.	S	S	S	S																				.	.	.	.	.		S		S																	S	T	T
Template Predicted Secondary structure												.																								.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.						.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		312	.	.	.	.	.	.	.						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.					370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure										.	.	.	.	.																																																			.	.	.	.
Query SS confidence										.	.	.	.	.																																																			.	.	.	.
Query Sequence		R	A	W	E	L	I	N	D	.	.	.	.	.	I	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	.	.	.	.	N	W	P	W	P	D	H	F	R	I	V	T	L
Query Conservation										.	.	.	.	.																																																			.	.	.	.
Alig confidence										.	.	.	.	.																						.	.	.	.	.	.																								.	.	.	.
Template Conservation																																				.	.	.	.	.	.
Template Sequence		A	V	D	E	V	L	R	A	E	L	G	E	G	G	E	Y	A	T	W	T	L	P	K	G	G	Y	F	I	S	L	D	T	A	E	.	.	.	.	.	.	P	V	A	D	R	V	V	K	L	A	E	A	A	G	V	S	L	T	P	A	G	A	T	Y	P	A	G	Q	D	P	H	N	R	N	L	R	L	A	P	T
Template Known Secondary structure												T	T	T	T	S	S							S	B	S	S							S	S	.	.	.	.	.	.	S												T	T						T	T	T	T	S	S	T	T			S	S	S								S
Template Predicted Secondary structure																																				.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.							.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
			383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		R	P	P	V	E	E	V	R	T	A	X	Q	V	V	A	A	C	I	R	L
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions