Phyre 2 alignment of P0A959 with c3dc1A

Job Description P0A959
Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012

Rank 48 Aligned Residues 379

% Identity 17% Template c3dc1A_

PDB info PDB header:transferase Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.						.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																								.	.	.								.	.	.	.	.
Query SS confidence																																								.	.	.								.	.	.	.	.
Query Sequence	V	C	Y	D	I	R	G	P	V	L	K	E	A	K	R	L	E	E	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	.	.	.	D	E	I	L	V	D	V	.	.	.	.	.	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H
Query Conservation																																								.	.	.								.	.	.	.	.
Alig confidence																																								.	.	.								.	.	.	.	.
Template Conservation
Template Sequence	M	N	Y	A	R	F	I	T	A	A	S	A	A	R	N	P	S	P	G	P	K	S	M	I	S	L	A	G	G	L	P	N	P	N	M	F	P	F	K	T	A	V	I	T	V	E	N	G	K	T	I	Q	F	G	E	E	M	M	K	R	A	L	Q	Y	S	P	S	A	G	I	P	E	L	L	S	W	L	K	Q	L
Template Known Secondary structure				G	G	G	S														S	S											G	G	G		S									T	T	S														T	S				T	T
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	85	.	.	.								.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence	Y	Q	A	R	.	.	.	.	.	.	.	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.
Template Conservation
Template Sequence	Q	I	K	L	H	N	P	P	T	I	H	Y	P	P	S	Q	G	Q	M	D	L	C	V	T	S	G	S	Q	Q	G	L	C	K	V	F	E	M	I	I	N	P	G	D	N	V	L	L	D	E	P	A	Y	S	G	T	L	Q	S	L	H	P	L	G	C	N	I	I	N	V	A	S	D	E	S	G	I	V	P	D	S
Template Known Secondary structure					T			T	T	T	T	S		G	G	G	T								S	S															T	T							S	S										G	G	G	T										T	T
Template Predicted Secondary structure
Template SS confidence
	91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170

	158	.	160	.	.	.	.	.	.	.	.	.	170											.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.
Query Sequence	L	D	D	I	R	A	K	I	T	P	R	T	R	.	.	.	.	.	.	.	.	.	.	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A
Query Conservation														.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	R	D	I	L	S	R	W	K	P	E	D	A	K	N	P	Q	K	N	T	P	K	F	L	Y	T	V	P	N	G	N	N	P	T	G	N	S	L	T	S	E	R	K	K	E	I	Y	E	L	A	R	K	Y	D	F	L	I	I	E	D	D	P	Y	Y	F	L	Q	F	N	K	F	R	V	P	T	F	L	S	M	D
Template Known Secondary structure						T	T	S		G	G	G	G	S		G	G	G				S							S	S		T	T	T																				T								T	T	T	T		B	S	S	S	S					S	G	G	G
Template Predicted Secondary structure
Template SS confidence
	171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

	228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.				.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																																			.	.	.
Query SS confidence																																																																			.	.	.
Query Sequence	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	.	.	.	Q	S	I	S	E	F	I	T	P	G	G
Query Conservation																																																																			.	.	.
Alig confidence																.	.																								.	.	.	.	.																						.	.	.
Template Conservation																.	.																								.	.	.	.	.
Template Sequence	V	D	G	R	V	I	R	A	D	S	F	S	I	I	S	.	.	S	G	L	R	I	G	F	L	T	G	P	K	P	L	I	E	R	V	I	L	H	I	Q	.	.	.	.	.	V	S	T	L	H	P	S	T	F	N	Q	L	M	I	S	Q	L	L	H	E	W	G	E	E	G	F	M	A	H	V	D	R	V	I	D
Template Known Secondary structure	S	S	S													.	.	S	T	T																				T	.	.	.	.	.	T	T	T		S	S
Template Predicted Secondary structure																.	.																								.	.	.	.	.
Template SS confidence
	251	.	.	.	.	.	.	.	.	260	.	.	.	.	.			.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

	305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320			.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.																																																			.	.	.
Query SS confidence																	.	.																																																			.	.	.
Query Sequence	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	.	.	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	.	.	.	W	P	W	P	D	H	F	R	I
Query Conservation																	.	.																																																			.	.	.
Alig confidence																	.	.																							.	.	.	.																									.	.	.
Template Conservation																																									.	.	.	.
Template Sequence	F	Y	S	N	Q	K	D	A	I	L	A	A	A	D	K	W	L	T	G	L	A	E	W	H	V	P	A	A	G	M	F	L	W	I	K	V	K	G	I	N	.	.	.	.	D	V	K	E	L	I	E	E	K	A	V	K	M	G	V	L	M	L	P	G	N	A	F	Y	V	D	S	S	A	P	S	P	Y	L	R	A
Template Known Secondary structure																		B	T	T							S	B	S	S							T	T		S	.	.	.	.		S						T					T	T						G	G	G	G	S	S	S	T	T	S
Template Predicted Secondary structure																																									.	.	.	.
Template SS confidence
	325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.					.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence	V	T	L	.	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence	S	F	S	S	A	S	P	E	Q	M	D	V	A	F	Q	V	L	A	Q	L	I	K	E	S
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
	401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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