Job Description P0A959 Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012 Rank 43 Aligned Residues 374 % Identity 21% Template c3asaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis Resolution 2.05 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30			.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																.	.																																		.	.	.	.	.	.
Query SS confidence																																.	.																																		.	.	.	.	.	.
Query Sequence		M	S	P	I	E	K	S	S	K	L	E	N	V	C	Y	D	I	R	G	P	V	L	K	E	A	K	R	L	E	E	.	.	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	.	.	.	.	.	.	T	A	Q	G	Y	C	D	S	K
Query Conservation																																.	.																																		.	.	.	.	.	.
Alig confidence														.	.																	.	.														.	.	.																		.	.	.	.	.	.
Template Conservation														.	.																																.	.	.
Template Sequence		M	K	R	N	P	H	F	V	S	L	T	K	.	.	N	Y	L	F	A	D	L	Q	K	R	V	A	Q	F	R	L	E	N	P	Q	H	T	V	I	N	L	S	I	G	D	T	.	.	.	T	Q	P	L	N	A	S	V	A	E	A	F	A	S	S	I	A	R	L	S	S	P	T	T	C	R	G	Y	G	P	D	F
Template Known Secondary structure										T				.	.																			T	T	S						S	S				.	.	.																				T	S	S	S								T	T
Template Predicted Secondary structure														.	.																																.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.			.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.				.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	.	K	A	V	H	Y	L	C	D	E	S
Query Conservation																																																																							.
Alig confidence																		.	.	.																							.																												.
Template Conservation																		.	.	.																							.
Template Sequence		G	L	P	A	L	R	Q	K	L	S	E	D	F	Y	R	G	.	.	.	F	V	D	A	K	E	I	F	I	S	D	G	A	K	V	D	L	F	R	L	L	S	.	F	F	G	P	N	Q	T	V	A	I	Q	D	P	S	Y	P	A	Y	L	D	I	A	R	L	T	G	A	K	E	I	I	A	L	P	C	L	Q	E
Template Known Secondary structure													T	T	S	T	T	.	.	.	S	S		G	G	G					S												.				S	S								S												T	T		S									G	G
Template Predicted Secondary structure																		.	.	.																							.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	.	P	D	L
Query Conservation																																																																														.
Alig confidence											.	.	.	.	.																																																															.
Template Conservation											.	.	.	.	.
Template Sequence		N	A	F	F	P	E	F	P	E	.	.	.	.	.	D	T	H	I	D	I	L	C	L	C	S	P	N	N	P	T	G	T	V	L	N	K	D	Q	L	R	A	I	V	H	Y	A	I	E	H	E	I	L	I	L	F	D	A	A	Y	S	T	F	I	S	D	P	S	L	P	K	S	I	F	E	I	P	D	A	R	F
Template Known Secondary structure		G	T	T						T	.	.	.	.	.	T				S						S	S		T	T	T																			T	T								T	T	G	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G
Template Predicted Secondary structure											.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.
Query SS confidence																													.	.	.
Query Sequence		L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	.	.	.	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y
Query Conservation																													.	.	.
Alig confidence																													.	.	.
Template Conservation
Template Sequence		C	A	I	E	I	N	S	F	S	K	P	L	G	F	A	G	I	R	L	G	W	T	V	I	P	Q	E	L	T	Y	A	D	G	H	F	V	I	Q	D	W	E	R	F	L	S	T	T	F	N	G	A	S	I	P	A	Q	E	A	G	V	A	G	L	S	I	L	P	Q	L	E	A	I	H	Y	Y	R	E	N	S	D
Template Known Secondary structure		T									G	G	G	T	T	T	T										T	T		B		T	T	S		B																															T	T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	P	R	V	D	D
Query Conservation
Alig confidence										.	.	.	.	.																								.	.	.
Template Conservation										.	.	.	.	.																								.	.	.
Template Sequence		L	L	R	K	A	L	L	A	.	.	.	.	.	T	G	F	E	V	F	G	G	E	H	A	P	Y	L	W	V	K	P	T	Q	A	N	I	.	.	.	S	D	R	D	L	F	D	F	F	L	R	E	Y	H	I	A	I	T	P	G	I	G	F	G	R	S	G	S	G	F	V	R	F	S	S	L	G	K	R	E	D
Template Known Secondary structure										.	.	.	.	.	T	T							S	S	S	S									T	T		.	.	.		T	T	T										S						G	G	G	G		G	G	G	T	T								S
Template Predicted Secondary structure										.	.	.	.	.																								.	.	.
Template SS confidence
		307	.	.	310	.	.	.	.						.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.				.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		388	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	L	S	L	S	K	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	A	A	C	E	R	L	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		379	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions