Job Description P0A959 Confidence 99.87% Date Thu Jan 5 11:09:27 GMT 2012 Rank 187 Aligned Residues 308 % Identity 15% Template c3aemD_ PDB info PDB header:lyase Chain: D: PDB Molecule:methionine gamma-lyase; PDBTitle: reaction intermediate structure of entamoeba histolytica methionine2 gamma-lyase 1 containing michaelis complex and methionine imine-3 pyridoxamine-5'-phosphate Resolution 2.20 Å

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		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.				.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.
Query SS confidence																												.	.	.
Query Sequence		A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	A	Q	G	Y	C	D	S	K	G	L	Y	.	.	.	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A
Query Conservation																												.	.	.
Alig confidence																								.				.	.	.											.	.	.	.	.	.	.	.
Template Conservation																								.																	.	.	.	.	.	.	.	.
Template Sequence		D	S	T	Q	Q	G	A	D	L	F	M	G	K	G	E	G	H	I	Y	S	R	L	.	G	N	P	T	V	E	Q	F	E	E	M	V	C	S	I	E	.	.	.	.	.	.	.	.	G	A	A	G	S	A	A	F	G	S	G	M	G	A	I	S	S	S	T	L	A	F	L	Q	K	G	D	H	L	I	A	G	D
Template Known Secondary structure		S	S									T	T		S	S			S	B	T	T	T	.																	.	.	.	.	.	.	.	.	T		S						S	S										T	T	T			T	T							S
Template Predicted Secondary structure																								.																	.	.	.	.	.	.	.	.
Template SS confidence
		1535	.	.	.	.	1540	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.		.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.									.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.
		127	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure							.	.	.	.
Query SS confidence							.	.	.	.
Query Sequence		P	D	Y	P	L	.	.	.	.	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L
Query Conservation							.	.	.	.
Alig confidence							.	.	.	.																			.	.	.	.	.	.	.																																		.	.	.
Template Conservation																													.	.	.	.	.	.	.																																		.	.	.
Template Sequence		T	L	Y	G	C	T	V	S	L	F	T	H	W	L	P	R	F	G	I	E	V	D	L	I	D	T	S	.	.	.	.	.	.	.	D	V	E	K	V	K	A	A	W	K	P	N	T	K	M	V	Y	L	E	S	P	A	N	P	T	C	K	V	S	D	I	K	G	.	.	.	I	A	V	V	C	H	E	R	G	A
Template Known Secondary structure		S																T	T								T	T	.	.	.	.	.	.	.	S										T	T								S	S		T	T	T									.	.	.									T
Template Predicted Secondary structure																													.	.	.	.	.	.	.																																		.	.	.
Template SS confidence
		1606	.	.	.	1610	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.								.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.				.	.	.	.	1670	.	.	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		R	L	V	V	D	A	T	F	T	S	P	C	F	L	K	P	.	.	.	.	.	.	.	.	L	E	L	G	A	D	I	A	L	H	S	V	S	K	Y	I	N	G	H	G	D	V	I	G	G	V	S	S	A	K	T	A	E	D	I	A	T	I	K	F	Y	R	K	D	A	G	S	L	M	A	P	M	D	A	F	L
Template Known Secondary structure								T	T	T		T	T	T			G	.	.	.	.	.	.	.	.	G	G	G	T		S						T	T	T	T	T	T		S	S	S									S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		1676	.	.	.	1680	.	.	.	.	.	.	.	.	.	1690	.									.	.	.	.	.	.	.	.	1700	.	.	.	.	.	.	.	.	.	1710	.	.	.	.	.	.	.	.	.	1720	.	.	.	.	.	.	.	.	.	1730	.	.	.	.	.	.	.	.	.	1740	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330																		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.																																																																	.	.	.
Template Sequence		C	A	R	G	.	.	.	.	.	.	.	.	.	M	K	T	L	P	I	R	M	Q	I	H	M	E	N	G	L	K	V	A	K	F	L	E	Q	H	E	K	I	V	K	V	N	H	P	G	L	E	S	F	P	G	H	D	I	A	K	K	Q	M	T	G	Y	G	S	T	F	L	F	E	M	K	S	F	E	.	.	.
Template Known Secondary structure						.	.	.	.	.	.	.	.	.		T	T																					T		T	T							T	T	S	T	T	S	T	T									S	S			S							S	S			.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.																																																																	.	.	.
Template SS confidence
		1748	.	1750	.										.	.	.	.	.	.	.	.	1760	.	.	.	.	.	.	.	.	.	1770	.	.	.	.	.	.	.	.	.	1780	.	.	.	.	.	.	.	.	.	1790	.	.	.	.	.	.	.	.	.	1800	.	.	.	.	.	.	.	.	.	1810	.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																						.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	H	F	R	I	V	T	L	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation		.	.																																																										.	.
Template Sequence		.	.	A	A	K	K	L	M	E	H	L	K	V	C	T	L	A	V	S	L	G	C	V	D	T	L	I	E	H	P	A	S	M	T	H	A	A	V	P	E	N	I	M	R	K	Q	G	I	T	P	E	L	V	R	I	S	V	G	I	.	.	E	N	V	D	D	I	I	A	D	L	K	Q	A	L	E
Template Known Secondary structure		.	.							T	S		S	S	S				S					S	S						T	T	T	T	T	T	T	T	S									T			T	T								S	.	.	S
Template Predicted Secondary structure		.	.																																																										.	.
Template SS confidence
				1816	.	.	.	1820	.	.	.	.	.	.	.	.	.	1830	.	.	.	.	.	.	.	.	.	1840	.	.	.	.	.	.	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.	.	.	.	.	.	.	.	1870	.	.			.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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