Job Description P0A959 Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012 Rank 44 Aligned Residues 391 % Identity 18% Template c2x5fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase Resolution 1.80 Å

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		1	.	.	.			.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.											.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.
Predicted Secondary structure						.	.																									.	.	.	.	.	.	.	.	.	.																																			.	.
Query SS confidence						.	.																									.	.	.	.	.	.	.	.	.	.																																			.	.
Query Sequence		M	S	P	I	.	.	E	K	S	S	K	L	E	N	V	C	Y	D	I	R	G	P	V	L	K	E	A	K	R	L	.	.	.	.	.	.	.	.	.	.	E	E	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	.	.	P	T	A	Q
Query Conservation						.	.																									.	.	.	.	.	.	.	.	.	.																																			.	.
Alig confidence						.	.																									.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation
Template Sequence		M	N	P	L	A	Q	S	L	N	E	Q	L	Q	Q	S	N	A	T	A	F	A	M	L	S	D	L	G	Q	N	M	F	Y	P	K	G	I	L	S	Q	S	A	E	A	K	S	T	T	Y	N	A	T	I	G	M	A	T	N	K	D	G	K	M	F	A	S	S	L	D	A	M	F	N	D	L	T	P	D	E	I	F
Template Known Secondary structure																																				T									T	T	S	S	S					S	S				T	T										T	T		S	S			G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q	H	Y	Q	A	R	G	.	.	M	R	D	V	T	V	E	D	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		P	Y	A	P	P	Q	G	I	E	E	L	R	D	L	W	Q	Q	K	M	L	R	D	N	P	E	L	S	I	D	N	M	S	R	P	I	V	T	N	A	L	T	H	G	L	S	L	V	G	D	L	F	V	N	Q	D	D	T	I	L	L	P	E	H	N	W	G	N	Y	K	L	V	F	N	T	R	N	G	A	N	L
Template Known Secondary structure		S				T	T																		T	T			G	G	G	B							S																T	T							S	S			T							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170				.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.						200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																														.	.	.	.	.
Query SS confidence																												.	.	.																														.	.	.	.	.
Query Sequence		H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R	A	K	I	T	P	R	T	R	.	.	.	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	.	.	.	.	.	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D
Query Conservation																												.	.	.																														.	.	.	.	.
Alig confidence																												.	.	.																														.	.	.	.	.
Template Conservation
Template Sequence		Q	T	Y	P	I	F	D	K	D	G	H	Y	T	T	D	S	L	V	E	A	L	Q	S	Y	N	K	D	K	V	I	M	I	L	N	Y	P	N	N	P	T	G	Y	T	P	T	H	K	E	V	T	T	I	V	E	A	I	K	A	L	A	N	K	G	T	K	V	I	A	V	V	D	D	A	Y	Y	G	L	F	Y	E
Template Known Secondary structure							B		T	T	S		B		S												S	S								S	S		T	T	T																						T	T										T	T	T	T		B		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		217	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.			.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																															.	.
Query SS confidence												.	.	.	.	.																																															.	.
Query Sequence		D	A	E	H	H	S	I	A	P	L	.	.	.	.	.	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y	R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	.	.	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A
Query Conservation												.	.	.	.	.																																															.	.
Alig confidence												.	.	.	.	.																																															.	.
Template Conservation
Template Sequence		D	V	Y	T	Q	S	L	F	T	A	L	T	N	L	H	S	N	A	I	L	P	I	R	L	D	G	A	T	K	E	F	F	A	W	G	F	R	V	G	F	M	T	F	G	T	S	D	Q	T	T	K	E	V	L	E	A	K	V	K	G	L	I	R	S	N	I	S	S	G	P	L	P	T	Q	S	A	V	K	H	V
Template Known Secondary structure		S				S								T	T			T	T													T	T		G	G	G								B																				T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		290	.	.	.	.					.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure							.	.	.	.
Query SS confidence							.	.	.	.
Query Sequence		L	G	G	Y	Q	.	.	.	.	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G	V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q
Query Conservation							.	.	.	.
Alig confidence							.	.	.	.																																														.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		L	K	N	N	K	Q	F	D	K	E	I	E	Q	N	I	Q	T	L	K	E	R	Y	E	V	T	K	E	V	V	Y	A	D	Q	Y	H	S	H	W	Q	A	Y	D	F	N	S	G	Y	F	M	A	I	K	V	H	.	.	.	.	.	D	V	D	P	E	A	L	R	K	H	L	I	D	K	Y	S	I	G	V	I	A
Template Known Secondary structure		T	T	T																											T		G	G	G	T	T	T								B	S	S							S	.	.	.	.	.	S	S													T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.						.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																			.
Query SS confidence																			.
Query Sequence		G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	.	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y
Query Conservation																			.
Alig confidence							.	.	.	.	.	.							.
Template Conservation							.	.	.	.	.	.
Template Sequence		L	N	A	T	D	.	.	.	.	.	.	I	R	I	A	F	S	C	V	E	K	D	D	I	P	H	V	F	D	S	I	A	K	A	I	D	D	L
Template Known Secondary structure			S	S	S		.	.	.	.	.	.					G	G	G	S		G	G	G
Template Predicted Secondary structure							.	.	.	.	.	.
Template SS confidence
		396	.	.	.	400							.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.