Job Description P0A959 Confidence 100.00% Date Thu Jan 5 11:09:27 GMT 2012 Rank 15 Aligned Residues 373 % Identity 23% Template c2o1bA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class i; PDBTitle: structure of aminotransferase from staphylococcus aureus Resolution 1.95 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		K	S	S	K	L	E	N	V	C	Y	D	I	R	G	P	V	L	K	E	A	K	R	L	E	E	E	G	N	K	V	L	K	L	N	I	G	N	P	A	P	F	G	F	D	A	P	D	E	I	L	V	D	V	I	R	N	L	P	T	.	.	A	Q	G	Y	C	D	S	K	G	L	Y	S	A	R	K	A	I	M	Q
Query Conservation																																																													.	.
Alig confidence																	.	.	.	.	.	.	.	.	.															.	.	.																			.	.
Template Conservation																	.	.	.	.	.	.	.	.	.															.	.	.
Template Sequence		I	S	N	K	L	A	N	I	P	D	S	Y	F	G	E	.	.	.	.	.	.	.	.	.	H	G	P	L	P	L	I	N	X	A	V	G	I	P	.	.	.	D	G	P	T	P	Q	G	I	I	D	H	F	Q	K	A	L	T	I	P	E	N	Q	K	Y	G	A	F	H	G	K	E	A	F	K	Q	A	I	V	D
Template Known Secondary structure								T	S				T	T			.	.	.	.	.	.	.	.	.			S	S									S		.	.	.	S	S														T	T						S				T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.															.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.										.	.	.	20	.	.	.	.	.	.	.	.	.	30				.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		H	Y	Q	A	R	G	M	R	D	V	T	V	E	D	.	I	Y	I	G	N	G	V	S	E	L	I	V	Q	A	M	Q	A	L	L	N	S	G	D	E	M	L	V	P	A	P	D	Y	P	L	W	T	A	A	V	S	L	S	S	G	K	A	V	H	Y	L	C	D	E	S	S	D	W	F	P	D	L	D	D	I	R
Query Conservation																.
Alig confidence																.																																																								.
Template Conservation																																																																								.
Template Sequence		F	Y	Q	R	Q	Y	N	V	T	L	D	K	E	D	E	V	C	I	L	Y	G	T	K	N	G	L	V	A	V	P	T	C	V	I	N	P	G	D	Y	V	L	L	P	D	P	G	Y	T	D	Y	L	A	G	V	L	L	A	D	G	K	P	V	P	L	N	L	E	P	P	H	.	Y	L	P	D	W	S	K	V	D
Template Known Secondary structure													T	T	T	S					S	S															T	T								S			S	S								T	T										T	T	T	.					G	G	G	S
Template Predicted Secondary structure																																																																								.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	I	T	P	R	T	R	G	I	V	I	I	N	P	N	N	P	T	G	A	V	Y	S	K	E	L	L	M	E	I	V	E	I	A	R	Q	H	N	L	I	I	F	A	D	E	I	Y	D	K	I	L	Y	D	D	A	E	H	H	S	I	A	P	L	A	P	D	L	L	T	I	T	F	N	G	L	S	K	T	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Q	I	I	D	K	T	K	L	I	Y	L	T	Y	P	N	N	P	T	G	S	T	A	T	K	E	V	F	D	E	A	I	A	K	F	K	G	T	D	T	K	I	V	H	D	F	A	Y	G	A	F	G	F	D	A	K	N	P	S	I	L	A	S	E	N	G	K	D	V	A	I	E	I	Y	S	L	S	K	G	Y
Template Known Secondary structure															S	S		T	T	T																	T	T	S	S								T	T	T	T		B	S	S	S					G	G	G	S	T	T											S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	A	G	F	R	Q	G	W	M	V	L	N	G	P	K	K	H	A	K	G	Y	I	E	G	L	E	M	L	A	S	M	R	L	C	A	N	V	P	A	Q	H	A	I	Q	T	A	L	G	G	Y	Q	S	I	S	E	F	I	T	P	G	G	R	L	Y	E	Q	R	N	R	A	W	E	L	I	N	D	I	P	G
Query Conservation
Alig confidence																											.	.	.	.	.																				.	.	.
Template Conservation																											.	.	.	.	.																				.	.	.
Template Sequence		N	X	S	G	F	R	V	G	F	A	V	G	N	K	D	X	I	Q	A	L	K	K	Y	Q	T	.	.	.	.	.	H	T	N	A	G	X	F	G	A	L	Q	D	A	A	I	Y	A	L	N	.	.	.	H	Y	D	D	F	L	E	E	Q	S	N	V	F	K	T	R	R	D	R	F	E	A	X	L	A	K	A	D
Template Known Secondary structure		T		G	G	G																					.	.	.	.	.																				.	.	.																											T	T
Template Predicted Secondary structure																											.	.	.	.	.																				.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260						.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.				280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	C	V	K	P	R	G	A	L	Y	M	F	P	K	I	D	A	K	R	F	N	I	H	D	D	Q	K	M	V	L	D	F	L	L	Q	E	K	V	L	L	V	Q	G	T	A	F	N	W	P	W	P	D	H	F	R	I	V	T	L	P	R	V	D	D	I	E	L	S	L	S	K	F	A	R	F	L	S	G	Y
Query Conservation
Alig confidence																						.	.	.	.
Template Conservation																						.	.	.	.
Template Sequence		L	P	F	V	H	A	K	G	G	I	Y	V	W	L	E	T	P	P	G	Y	.	.	.	.	D	S	E	Q	F	E	Q	F	L	V	Q	E	K	S	I	L	V	A	P	G	K	P	F	G	E	N	G	N	R	Y	V	R	I	S	L	A	L	D	D	Q	K	L	D	E	A	A	I	R	L	T	E	L	A	Y	L	Y
Template Known Secondary structure									B	S	S								T	T		.	.	.	.																				S	G	G	G		G	G	G	T	T								S		T	T											G	G	G	G	G	G
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.					.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		403
Predicted Secondary structure
Query SS confidence
Query Sequence		H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		384

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions